Dermochelys coriacea (leatherback sea turtle): 119856996
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Entry
119856996 CDS
T09064
Symbol
TRAF6
Name
(RefSeq) TNF receptor-associated factor 6 isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc04010
MAPK signaling pathway
dcc04120
Ubiquitin mediated proteolysis
dcc04140
Autophagy - animal
dcc04144
Endocytosis
dcc04620
Toll-like receptor signaling pathway
dcc04621
NOD-like receptor signaling pathway
dcc04622
RIG-I-like receptor signaling pathway
dcc05132
Salmonella infection
dcc05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
119856996 (TRAF6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
119856996 (TRAF6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
119856996 (TRAF6)
04140 Autophagy - animal
119856996 (TRAF6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
119856996 (TRAF6)
04621 NOD-like receptor signaling pathway
119856996 (TRAF6)
04622 RIG-I-like receptor signaling pathway
119856996 (TRAF6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
119856996 (TRAF6)
09171 Infectious disease: bacterial
05132 Salmonella infection
119856996 (TRAF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dcc04131
]
119856996 (TRAF6)
04121 Ubiquitin system [BR:
dcc04121
]
119856996 (TRAF6)
Enzymes [BR:
dcc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119856996 (TRAF6)
Membrane trafficking [BR:
dcc04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
119856996 (TRAF6)
Ubiquitin system [BR:
dcc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
119856996 (TRAF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
zf-TRAF
zf-C3HC4_2
TRAF6_Z2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-TRAF_2
zf-RING_5
Med21
DUF4455
TRAF3_RING
SlyX
PspA_IM30
DUF16
zf-RING_11
CENP-F_leu_zip
HMMR_N
U-box
ATG16
DUF1664
Spc29
TMF_DNA_bd
zf-U1
Sina_ZnF
Motif
Other DBs
NCBI-GeneID:
119856996
NCBI-ProteinID:
XP_038261115
LinkDB
All DBs
Position
6:complement(47848096..47882306)
Genome browser
AA seq
588 aa
AA seq
DB search
MRGPASERGVRSWGGLCSFTTGRLRGDPLVTAYRLLSTQLVTMSLIQSDNSYRARDLETG
CCAAMASAGSAGAKEDSIGVSVSSGTGNLPNSFTEETQGYDVEFDPPLESKYECPICLMA
LREAVQTPCGHRFCKGCIVKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLKVRCPN
KGCLLKMELRHLEEHQLNCDFCSVECLQCQGSFQKNQLQNHMTLECPRRQVCCPNCATSM
AYEDKELHDQNCPLANVFCEYCNTMLIREQLPNHYNNDCPTAPVPCTYSAFGCPEKMQRN
ELAHHMQEYTQVHMRMMAQTLRSISVTTTPMSYLSGLSFEPSLFSHVPPATYDCNPEVEN
FKETIQQLEGRLVRQDHQIRELIAKMETQSAHVGDLKRTIQNLEEKITEMEAQQCNGIYI
WKIENFSTYLRAQEEEKPVVIHSSGFYTGKPGYKLCLRLHIQLPNSQRCANFISLFVHTM
QGEYDSHLPWPFQGTIRLSILDQSEGHLRQNHEEVMEAKPELLAFQRPAIQRNPKGFGYV
TFMHLQALKQRTYVKDDTLLVRCEVVTRLDLNSVRREGFQPRSTDGAV
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgagaggacccgcctcggagcgtggcgtgcgctcctgggggggcctgtgtagcttcaca
acgggaaggctccggggtgaccctctggtcacagcttatcgtctcctcagtactcaacta
gttactatgagcttgatacagagtgacaacagctatagagccagagatctggagactggc
tgctgtgcagccatggccagtgcgggcagtgctggagctaaagaagacagcataggtgtc
tctgtcagcagtgggactggaaaccttcccaactccttcacggaggagactcaaggatat
gatgtggagtttgatccccccctggaaagtaaatatgaatgtccaatctgtttgatggct
ctacgggaagcagtgcagacgccatgcggacaccggttttgcaaaggctgcattgtcaaa
tcaataagagatgcaggtcacaaatgtccagtagacaatgaaattctactcgaaaaccaa
ctcttccctgacaactttgccaaacgggaaatcctctcattgaaggtgagatgtcccaac
aagggctgtcttctaaagatggagctgagacatctagaggagcatcagttgaattgtgac
ttctgctctgtggaatgcctacaatgccagggctccttccagaagaaccagcttcaaaac
cacatgacgctggaatgcccacggcggcaggtctgctgtccaaactgtgccacatctatg
gcttatgaagataaagagcttcatgaccagaattgtccacttgcaaatgtgttttgtgaa
tattgcaatacaatgctcatcagagaacagttgcctaatcattataataatgactgccct
accgccccagtaccatgtacatacagtgcctttggatgtcctgaaaagatgcagaggaat
gagttggcacatcatatgcaagagtacactcaagttcacatgagaatgatggctcagact
ctccggagtattagtgttactacaactcccatgtcctacctcagtggtctatcctttgag
ccgtctctcttctcacatgtcccacctgccacatatgactgcaacccagaagttgagaac
ttcaaggaaaccattcagcagttggaaggtcgcctggtaagacaagatcaccaaatcaga
gagcttattgctaaaatggagactcagagcgctcacgtgggagacctcaaacgcactatc
caaaatctagaggaaaaaattactgaaatggaggcacaacaatgtaacggcatttatatc
tggaagattgagaacttcagcacatatctgagagcccaagaagaagagaaacctgttgtg
atccacagctctggcttctacactgggaaaccaggctacaaactgtgtttgcgcctacat
atccagttaccaaattctcagcgctgtgctaactttatatccctctttgtccatactatg
caaggagaatatgacagtcatctgccttggccatttcagggcaccatacgactttctatt
ttggatcaatcagagggacatttaaggcaaaatcacgaagaagtcatggaagccaaacct
gagcttctagcctttcagagaccagcaatccagcgcaacccaaaaggttttggttatgtg
acattcatgcacctgcaagctttgaagcaaagaacctatgtaaaagatgatactctcctg
gtgcgctgtgaggttgtaacacgtttagacttgaacagtgtacggagagagggctttcaa
cctcgcagtactgatggagctgtatag
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