Dermochelys coriacea (leatherback sea turtle): 119859052
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Entry
119859052 CDS
T09064
Symbol
COL17A1
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
LapA_dom
Motif
Other DBs
NCBI-GeneID:
119859052
NCBI-ProteinID:
XP_043375071
LinkDB
All DBs
Position
7:121349154..121414495
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AA seq
1509 aa
AA seq
DB search
MDSVTKKTKRDGAEVTERLITESVTTRLTSLPPKGGSSTGHKTAHGGGSGMEKRTFTHGS
SYVTSSGSGRMNSSSSYRQTPSPCSTLPKSPGSTFERKTYVTRNATYEGSSSANSSPEFP
RKEFASSNTRGRSQSRESEIRVRLQSASPSTRWTELDDVKRLLKGSRSASVSPTRSSSST
LPIPKKAVVETKMVTQSSQSVSGTYDTTILNAALPPYMWSSTLPAGSSLGSYHNNMAQGS
SLVNTMSHSTGSVFGIPNNLASGSPTLNTGLSSSSTVFGVQNNLAPSSAAMTHSATLAST
VYGVKKNTSQSAGMAGSGVCTSTIGSTVNSQNDDILRKDCKFLLLEKENIPAKKDMELLI
MTKDSGKVFSASSTGLSGASFAEDTLKREKQGFSSSYAADSYLKSETNGGLKSVSTKDKA
TYAEIPGDDGGGGIGAAPAWCPCGSCCSWWKWLLGLLLAGLFLLGLLFGLIALAEEVKKL
KSRVENLEKTQANYLLINPHNADINQQYSISDVGKGPDYATGFSHKDQEALWLFMRSKMA
LERGRGFFQGEKGEPGLKGDTGMQGPKGNQGLPGAPGIPGLMGHPGPEGPKGQKGSVGDH
GMEGPMGQRGREGPPGPRGEPGPPGFGEKGDRGVVGDQGPAGPPGPPGSVGLKGMTGSPG
PHGPPGSPGLQGFRGEAGFPGAKGEKGALGAPGPKGDHGEKGPRGLTGEPGSRGLPGPPG
EPGTKGSIGPAGPDGHQGPRGEQGLMGMQGLRGPPGPAGDAGQPGLTGPQGPPGLPGNPG
RPGAKGEPGAPGQVITAEGSSTIALPGPPGPPGAVGPPGPPGVPGPVGPAGLPGLQGPRG
ERGLTGETVVETIKSEVATSLSQISSDLLGRAGPPGPPGPPGASIQGPPGPRGPAGEGLP
GPPGPPGRPGSFVPTSETFFAGPPGPPGPKGDQGSPGPRGFTGEPGQPGLPGISASGAGV
AIQGPPGPAGPRGPKGDKGDAGVPGAPGIPGGSSTGGSSNSRHSQGPPGPPGPRGPPGPA
GGSLQEIQQYIAEYLQSDTIGHYLIGPQGPPGPPGPPGIITTVDGQSLDYTELAKRVMSS
MTSSGYNFEMSSSSSSSSRFLTYEDILAMLQREEVRRYLIGPQGPPGPPGPGGDGLSLSL
SYDELTSRVISYITNNGLSIGLPGPPGPPGLPGTSYSDLIALLQDSEFSGIVGPPGPQGP
PGVPGAPGMPGSSLSTFSLEDVTSYLQSVGYASISGPPGPPGPPGPPGPPGLSGTGHFSY
TDNVLSDTFRSELIQYLTSDDVRRFISGPPGPPGPMGPPGPKGDSGIMAGSYGGSLGAGG
SYGGAMGSDGSYGGAMGSDGSYGGAMGSDGSYGDAMGAGGSYGGSLGADRAQRRSMSSSR
SYSESFTGSLDYNELALRVSESIQSQGLLRDMVTYAAQGPPGPPGPPGISKVFANYGNVT
EDLMDFFRTYGTIPGPPGHRGEMGYPGPKGEAGPMGPPGPQGPRGPKGEKGRKGEQVFVG
RRKRRSVGV
NT seq
4530 nt
NT seq
+upstream
nt +downstream
nt
atggactcagtaacgaagaaaaccaaacgggatggagcagaagtcactgaaagacttatt
acagagtcagtaaccacaagactgacgtccttgccaccaaaaggagggagtagcactggg
cacaaaacagcccatggcggagggagtggaatggagaagaggactttcacccacggcagc
agctatgtgacttcaagtggaagtggtagaatgaattcctcctccagctacaggcaaacc
ccatctccttgctctactctccccaaatcacctggctcaaccttcgaaagaaaaacctac
gtcacccgcaatgcaacatatgaagggagctccagcgcaaattcttctcctgaattccct
agaaaagagtttgcatcgtccaataccagagggcggagtcaaagccgagagagtgaaatc
cgagtacgactccagagtgcttctccctcgaccagatggacggaactggatgatgtgaag
cgtttgctgaaggggagtcgatcggccagcgtcagccccacacgatcgtcatccagcact
ctccccatccccaagaaagctgtagtggaaacaaagatggtgactcagagctcccagtca
gtgtcggggacatatgacacaaccatactgaatgctgccctccctccatacatgtggtcc
tccaccctgcctgcagggtcctcccttggcagttaccacaacaatatggcccagggctct
tctctggtcaacaccatgtcccattcaacaggatcagtgtttggcatcccaaataacctg
gcttctggctctcctactctgaacacagggctgagcagttcctcaacagtgtttggtgtt
caaaacaacctggctccaagctctgcagccatgactcatagtgcaaccttggcctccaca
gtatatggagtgaagaaaaacacttcccagagcgctggaatggctggtagcggagtgtgc
acttcaactattggcagcactgtgaactcccagaatgacgacatcctgcgtaaagactgc
aagttcctgctgctggagaaggagaacatccctgccaagaaggacatggagctcttgatc
atgacgaaggacagcggcaaggtcttcagtgcttccagcacggggctcagtggagcgtcc
tttgcagaagacaccttgaagagagaaaagcagggcttctcttcctcttatgctgcagac
tcctacctgaaatctgaaacaaatggaggtctaaaatccgtgtcaacaaaggacaaagca
acttatgcagaaattccaggcgatgatggagggggagggataggggcagccccagcttgg
tgtccctgtggttcctgctgtagctggtggaaatggctcctgggtttgctcttggctggg
ctgttcctccttggattgctcttcggactcatcgctttggcagaagaagtgaagaagctg
aaatctcgtgtggaaaacctggagaaaacccaagccaactacctgttaattaatccacac
aatgcggatattaaccaacagtacagtatttctgatgtcgggaaaggtccagactatgct
acaggtttcagtcataaagatcaagaggctctctggctgtttatgaggagcaaaatggct
ttggaaagaggacgaggtttcttccaaggggagaaaggggaacctggtctgaaaggcgat
acgggaatgcaaggtcccaaaggaaatcaaggacttcctggtgcaccaggcatcccaggt
ttgatggggcacccaggaccagagggaccgaaaggacagaaaggcagcgtaggtgatcat
ggcatggagggacccatgggccaaagagggcgagaagggccaccagggcctcgtggggaa
cctggaccacctggatttggggagaaaggagacagaggtgttgttggtgatcagggacct
gctggaccacctgggccaccagggtctgttggcctcaaaggcatgacgggttctcctggc
ccacacggtccgcctggttctcctggtcttcaaggatttagaggtgaagcaggtttccca
ggggccaaaggtgagaaaggagctttaggagcacctggacccaaaggtgaccatggagag
aaaggacctcgtggtctgacaggtgagccaggctcaagaggattgcctggtcctccaggg
gaaccgggaaccaaaggatccattggtccagctggccccgatggacaccaaggcccaaga
ggggaacaaggtctcatgggaatgcaaggattgcgaggaccacctggacccgctggcgat
gcaggacagccaggtctcacaggaccgcagggacccccaggactcccaggcaaccctggt
cgaccaggggctaaaggtgaacctggtgctcccggccaagttataactgctgagggttca
tcaactattgctctccctggccctccaggcccaccaggagcagtaggaccaccaggacca
cccggtgtcccaggtcctgttgggccagctggtctccccggactgcaaggtccacgtggc
gagagagggctcaccggtgaaaccgttgtggaaaccatcaaatcagaagttgcaacttca
ttatctcaaatttcatcagatttactgggacgagcaggcccccccggccctccaggaccc
ccaggcgcttccatccagggaccacctggacctcgcggtccagcaggagaaggattacca
ggcccgccaggcccaccaggaagaccaggctccttcgtgcccacctcagaaacattcttc
gcaggtccaccaggcccacctgggccaaagggagaccaaggttcaccaggcccacgagga
ttcacaggtgaaccaggtcagcccggcctcccaggaatctccgcttcaggtgctggagtt
gccatccagggacctcctggacctgcagggcctcgaggacccaaaggagacaaaggtgat
gcaggtgtgccaggggctcccggcatcccaggagggtcttcaacaggcggatcttcaaac
tcaagacatagccagggtccaccaggtcctcctggccctcgtggtcccccaggcccagct
ggaggctcactgcaggagattcagcagtacattgcggagtacttgcagagtgacactatc
gggcattatctgattggacctcaaggcccaccaggaccccccgggccaccaggaatcatc
accactgttgatggacaatccttggactacaccgagctggccaagcgtgttatgagctcc
atgacgagctccggttacaattttgagatgtcaagctcttcatcctcctcatcaagattc
ttgacttacgaagacatcctggccatgctgcagagagaagaagttcgtcggtacctaatt
ggacctcaggggcccccaggcccacctggacccggaggagatggcttatctctgtcactg
agctacgatgagttgaccagccgggttataagctacataacaaataatggactcagtatt
gggctcccagggcccccaggtcctccaggattacccggcacatcttatagtgacctaata
gctttactccaagactctgaatttagtggcattgttggacccccagggccacagggaccc
cctggagttccaggagccccaggaatgccaggcagctctctctccacattcagcctagag
gatgtcacctcttacctgcaaagtgtgggatatgcttccatctctggacctccaggacct
ccagggcctccagggccaccaggaccaccaggtctatcaggaactggccacttctcctac
actgacaacgtgctgagcgacacatttaggagcgagctgatccaatatctaaccagtgat
gatgttcgaaggttcatctcggggcctcctgggcctccagggcctatgggcccaccaggg
ccaaaaggagatagcggcatcatggctgggtcgtacggaggatccctgggtgcaggaggg
tcatacggtggcgccatgggcagcgatgggtcgtacggtggcgccatgggcagcgatggg
tcgtacggtggcgccatgggcagcgatgggtcgtacggtgatgccatgggtgcaggtgga
tcgtatggtggatccctgggcgcagacagagcacagaggagatcaatgagttcgagcaga
tcctacagcgagtcattcaccggatcgctggattacaacgagctggcacttcgggtgtcg
gagagcatacagagccaaggcctcctccgggacatggtcacttacgcagcacaaggtcca
ccaggacccccaggaccacctgggatcagcaaggtgtttgcaaactatggcaatgtcacc
gaggacctcatggacttcttcagaacatatggtaccatcccagggccacccggtcatagg
ggggagatgggctacccagggcccaaaggtgaggctggaccaatggggcctccaggaccc
caaggacccaggggtccgaagggggagaaaggtaggaaaggtgaacaagtatttgttggc
agaagaaaaagaagaagcgttggggtctaa
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