Dermatophilus congolensis: SAMEA4475696_1756
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Entry
SAMEA4475696_1756 CDS
T05038
Name
(GenBank) Putative DNA ligase-like protein Rv0938/MT0965
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dco
Dermatophilus congolensis
Pathway
dco03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SAMEA4475696_1756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dco03400
]
SAMEA4475696_1756
Enzymes [BR:
dco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SAMEA4475696_1756
DNA repair and recombination proteins [BR:
dco03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SAMEA4475696_1756
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
SNV23194
UniProt:
A0A239VNH2
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All DBs
Position
1:1981368..1983314
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AA seq
648 aa
AA seq
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MLATPTTGVPTSADWVHEVKWDGMRVLANVHHSHACLHTRNETDASTRFPEIVAALTAQS
TPADVLLDGEVVLFDEEGSPSFKKLQNRIFVKRADTAQRLAAIAPVTFMVFDLLRFNGRD
LIDEPWTVRRQLLETLTWNSDRVTVTPTFPDGEALLEATQEQGLEGIISKRIDAPYSPGK
RSKAWRKLPHRPTHSMVIGGWRPETGSDNRVGSLLVGLPESSAGEATRLCFLGRVGSGVA
GSAQETLMPLLREHAAKAPPFTTDLPDADAAGAHWVHPRLVIDVRALGGIPKPGYRLRQP
SFQGLRPDLTPADLVTETTKSATAKTNDTPTKASKKAQPLPQQPQTMSADVEDRRVPLTN
LEKVLYPDSGTTKSEIISYLVEASAALLPALAGRPVTRVRWPHGVQGPSFFEKNTPKNTP
EWVQTITLHSPGSRRESAQVTYPLVDDLSTLMWLGNLAALELHVPQWRIDSQGAPYAPDR
LVIDLDPGEPAGLTECARVALIVRDVLLEQGAGVIVPVTSGSKGIQLYTPVVGDPDDRDA
TRSRAQQLAKTLEQTHSDLVVATMTKAKRPGKILLDWSQNTRSKTTICPYSPRGKHRHVT
VAAPRTWDEIEAAATGAPAHALTQLGPREVLDRLEKLGNLFAPVHLWT
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgctggcaacccccaccaccggtgtccctacaagtgctgattgggtacacgaagtgaag
tgggatggcatgcgcgtcctggcaaatgtgcatcacagccacgcctgccttcacacccgt
aacgaaacggatgccagcacccgattccccgaaatcgtggctgctttaactgctcagagc
acgccagcagatgtgctcctcgatggtgaagttgtgcttttcgatgaggaaggcagcccg
tcgttcaaaaaactacaaaaccgcattttcgtgaagagagcagatactgctcagcgcttg
gcggccatcgcaccggtcacttttatggtctttgatctgctccggttcaatggccgtgac
ctcatagacgagccgtggacggtgcggcgccaactgttggaaacactcacctggaacagt
gaccgagtcacagtgacacccacttttcctgatggtgaagccctcctagaagcaacccag
gagcaggggctggaggggatcatcagcaaacgtatcgatgccccctattcccccggtaaa
cgcagcaaagcatggcgtaaattgccccaccggcccacacattcgatggtgatcggcggt
tggcggcctgaaaccgggtcagacaaccgggtgggttctcttcttgttggcctaccggaa
agctcagctggtgaagctactcggttatgtttccttggccgtgtcggtagcggcgtggcc
gggtcggcacaagaaacgctgatgcctttactgcgcgaacacgccgcgaaagcacccccc
ttcactacagatcttcccgatgcagacgctgcgggggcgcactgggttcacccccgtctt
gttatcgatgttcgcgcgctgggcggtataccaaaaccgggctaccggctgcgtcaaccc
tcgttccagggactgcgtcctgacctgacccctgccgacctagtcaccgaaaccaccaaa
tcagctactgctaagaccaacgacacccccactaaggcaagcaaaaaagcccagcccctg
ccgcagcagccgcagactatgagcgccgatgtcgaggaccgccgtgttccgttgaccaat
cttgagaaggttctctaccccgattcaggcaccactaaatccgagatcatcagctacctg
gtggaggcttcggctgcgcttcttcccgcactggcaggacgtccagtcaccagggtgcgt
tggccacacggggtgcagggcccgtcttttttcgagaaaaacaccccgaagaacacgcct
gagtgggtgcagaccatcaccctccactcccccggttcgcgccgcgaatctgcccaggtc
acataccctctggttgacgacctgtccacgctgatgtggctgggaaacctcgctgcactc
gaactgcatgtaccgcagtggcgcatcgatagtcagggcgcgccgtacgccccggatcgt
ttagttattgaccttgaccccggggaacctgcagggcttactgaatgcgcacgcgttgcc
cttatcgtgcgtgatgtcctgctggagcagggggcgggcgtcatcgtcccggtaaccagc
ggcagcaaaggcatccagttgtacacccctgttgtcggtgatcctgatgatcgtgacgcc
actcgttctcgtgctcaacagttagcaaaaactcttgagcagacccactctgacttggtg
gttgcgacgatgacgaaggcgaaacggccaggcaagatcttgctcgactggagccaaaac
acacgctctaaaaccacgatttgtccttattcgccgcgtggtaaacatcgccatgtcacg
gtcgctgcgccgcgtacctgggatgagatagaggccgccgctaccggtgcaccggcgcat
gcgctgactcagcttggcccgcgcgaggtgctcgatcggttggagaagctcggcaacctg
ttcgcacctgtgcatctttggacctga
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