Daucus carota (carrot): 108192240
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Entry
108192240 CDS
T05350
Name
(RefSeq) pre-mRNA-processing factor 19 isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
dcr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108192240
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108192240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108192240
04121 Ubiquitin system [BR:
dcr04121
]
108192240
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108192240
Enzymes [BR:
dcr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108192240
Spliceosome [BR:
dcr03041
]
Complex B
Other components
Prp19 complex
108192240
Complex C
Prp19-CDC5 complex
108192240
Ubiquitin system [BR:
dcr04121
]
Ubiquitin ligases (E3)
U-box type E3
108192240
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
108192240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
NBCH_WD40
WD40_like
WDR54
zf-Nse
Coatomer_WDAD
Motif
Other DBs
NCBI-GeneID:
108192240
NCBI-ProteinID:
XP_017227800
UniProt:
A0A175YAX1
LinkDB
All DBs
Position
7:complement(21134703..21148634)
Genome browser
AA seq
429 aa
AA seq
DB search
MICSFSKKSTECPVISKTSGYIFDKLLIEKFILDSGKCPITGEPLSMDDIVLVRTPKIPD
AETVDMSSSSNSKTVEEIDCQRMLDDMVEAIRESSARLRRFRRNSREIPTSLASADALQN
CMLSGTHHLHKTDMPGILSLDIDISKDIIATGGADANAIVYDQVSGNVISALEGHTKQVT
SIKFVKEGELVITGSADSTVRVWQRSEGGSYKYKHILDHHTDEVQAVMIHPIQTYLITAS
LDCTWNLYDISHDFRIVACAKGSERFTTAAFHPDGHVIGTGTSRFVRFWDVSKQDDIFKI
DAHAAPVSSIAFSENGYHLATAAEDGVKLWDLRFIRTLMTFPSDLKTGTRPIDFDYSGLY
LASGGSHISVYDIASAPKYGTIATFSDYSGIANITSLKFGKDAKYIAAGSQDSKLLLFSS
PKNDELMDC
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgatttgttcattttccaaaaagtctaccgagtgtcctgttatttcaaagacttctgga
tacatattcgacaagctattaattgagaaattcatccttgattccggaaaatgtcccatt
accggggagccgttaagcatggacgacattgttcttgtcagaacacccaagataccagat
gcagagacagttgatatgagttcttcaagtaactctaaaactgtcgaggaaattgattgc
caaagaatgctagatgatatggttgaagctattagagaatcttctgcacgcttacgacga
ttcaggagaaattcaagagagatccctacatccctggcctctgctgatgctctacaaaac
tgtatgttgagcggcactcatcatcttcacaagactgacatgccaggcatattatctttg
gatattgacatttccaaggatatcattgctactggtggtgctgatgctaatgctatcgtc
tatgatcaagtgtctggaaatgttatatcagcactggaaggtcacactaagcaggtcaca
agtattaaatttgtgaaggaaggtgaacttgtaattaccggatcggctgatagtactgtt
cgtgtgtggcaacggtcagaaggcgggagctacaagtacaagcacattttagatcatcac
actgatgaggtgcaagctgtcatgatccatccaatccagacgtacttaataacagcttcg
ctcgactgtacttggaatttatatgacatctctcatgattttaggattgttgcttgtgcc
aagggatctgagagatttacaactgcagcttttcatcctgatggtcatgtaattgggacc
ggcacctcacgttttgttagattctgggatgtatcaaaacaagatgatattttcaaaatt
gatgctcatgctgcgccagtgagctcaattgcgttttcggaaaatggttaccatctagcg
actgctgctgaagatggtgtaaagctgtgggacctacgttttataagaactctcatgaca
ttcccgtcagatttgaaaacaggcacacgtcccatcgactttgattatagtgggctttat
cttgccagtggtggttcacatatcagtgtttacgacattgcctcggcgcccaagtacgga
actattgccaccttttctgattattcgggcatagctaatattacttctttgaaatttggc
aaagatgccaaatacatagcagccgggtcacaggattcaaagctattattattcagctcg
cctaaaaatgacgaattgatggactgttag
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