Daucus carota (carrot): 108202565
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Entry
108202565 CDS
T05350
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108202565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108202565
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108202565
Spliceosome [BR:
dcr03041
]
Complex C
Other components
Step II factors
108202565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
SLFN-g3_helicase
AAA_19
AAA_30
nSTAND3
Flavi_DEAD
AAA_24
T2SSE
AAA_16
Sigma54_activ_2
ABC_tran
AAA_7
Motif
Other DBs
NCBI-GeneID:
108202565
NCBI-ProteinID:
XP_017226511
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All DBs
Position
9:complement(24845291..24857217)
Genome browser
AA seq
1281 aa
AA seq
DB search
MDKLNRLEPDENTPGGLQIPGKDKLLYRPQRKSRLGLDVLAEAKRGEKADGVFKVPKDKM
SSIAASMDEEVSELSEVDDVGINGSSKVGNTNRKYRDHGVSHTPHSEITSNEGQDSDARR
EHRSSDHARHETPATSHGSSQSDRYQNSRYDRYEAADNSRKRRDYREDSRSDSRSSRRHE
RGREVDSYKDGYYRHDRQYNNELERKRGRYEGSRGTPGRYDARGTPDRSDWDSGRWEWED
TPYRDSRPGSSRRHQPSPAPMLLGASPDVRLVSPWLGGHSSYSSGAASPWDSVAPSPVPI
RASGSSVKSSNSRYGSRPQIPFSADNSLQSEAPEDDADYFNNDNPEITENMRLEMEYNAD
RAWYDREEGNTMFDEDKSSFFLGDEATFKKKETELAKKLVRRDGTKMSLAQSKKLSQLTA
DNAQWEDRQLLRSGAVRGTEVQTEFDNEEERKVILLVHDIKPPFLDGRIVFTKQAEPVMP
IKDPTSDMAIISRKGSTLVREVHEKQSMNKSRQRFWELAGSKLGDILGVEKTAEQVDADT
AVVGDDGEVDFKEDAKFAQHLKKDEAVSDFAKSKTLSQQRQYLPIYSVRDELLQVVRENQ
VVVVVGETGSGKTTQLTQYLHEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMETELGDLV
GYAIRFEDVTGPNTVIKYMTDGVLLRETLKDADLDKYRVVVMDEAHERSLNTDVLFGILK
NVVARRRDFKLIVTSATLNAEKFSLFFGSVPIFHIPGRTFPVQTLYSKSPCEDYVEAAVK
QAMTIHITSAPGDILIFMTGQDEIEAACYALSERMEQLVSTTKQSVSKLLILPIYSQLPA
DLQAKIFQKAEDGARKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDALQVFP
VSRAAADQRAGRAGRTGPGTCYRLYTETAYQNELLPSPVPEIQRTNLGNVVLLLKSLKVD
NLLDFDFMDPPPQDNILNSMYQLWVLGALDNVGGLTDLGWKMVEFPLDPPLAKMLLIGEK
LECLNEVLTVVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYQQWKSNSYR
GDWCNDHYLHSKGLKKAREVRSQLLDILKTLKIPLTSCGPDWDIVRKAICSAYFHNAARL
KGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELILTTKEYMQCATSVEPEWLAEL
GPMFFSVKDSDTSMLEHKKKQKESKSAMEEQMEKMKKDEAEKERRSKEEDKQKRSKQQQQ
ISMPGERKAASSYSKPKKMGL
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atggacaaactgaatcgattagagcctgatgaaaacactcccggcggcctacaaattccc
ggcaaagacaagctcttgtatcgacctcagcgaaaatctcgcctaggattggatgtactt
gctgaagcgaaacgtggtgaaaaggcggatggtgttttcaaggttccgaaagataagatg
tcgtctattgcagcgtctatggatgaagaagtttctgagctttctgaggttgatgatgta
gggattaatggttcgagcaaagttggtaatacaaacaggaagtatcgtgatcacggtgtt
agtcacacgccacattcagaaattacttcgaatgaaggacaagatagtgatgcacgtcgg
gaacatcgttcaagcgatcatgcacgtcatgagacaccagccacttctcatggaagttct
caaagtgatcgatatcagaattctaggtatgatagatatgaagcagctgataattctaga
aaaagaagagactatagagaggactctagaagtgatagcaggtcatcaaggagacatgag
agaggcagagaagtagacagttacaaagatgggtattatcgtcacgatagacagtacaac
aatgagcttgagaggaagagaggcagatatgaaggttctaggggtactccagggagatat
gatgctcggggtacaccagacagatctgactgggatagtggcagatgggaatgggaagat
acaccatacagggatagtcgtcctggtagcagcaggagacatcaaccttcaccagcccct
atgttgcttggagcatctcctgatgtacgattggtttctccatggctggggggccacagt
tcttactcttctggtgctgcttctccctgggatagtgttgctccctctcctgttccaata
cgagcatcaggatcatcagtcaaatcttcaaactcaagatatggttcaaggccccaaata
cccttttctgcagataactcactgcagtccgaggctccagaagatgatgctgattatttc
aacaacgataacccggaaattactgaaaatatgcgtttagagatggaatataatgctgac
cgtgcatggtatgatagggaggaaggaaatacaatgtttgatgaagacaaatcatcattt
tttcttggcgatgaggctacttttaagaagaaggaaacagagttggccaagaagctggtt
cggagagatggtaccaagatgtcacttgcacagagcaagaagttgtcacagctcactgcc
gataatgctcaatgggaggatcgacaactactaaggtctggagctgttagaggaactgag
gtgcagactgagtttgataacgaggaagaaagaaaagtaattctccttgttcatgatata
aagccaccttttctggatggaaggattgttttcacaaagcaggcagaaccagtaatgcca
attaaagatcctacgtctgatatggctataatatcacgtaaaggttccactttggtgcgt
gaagttcatgaaaaacaaagtatgaacaaatcacgtcaacgtttttgggagcttgctgga
tcaaaacttggtgatatccttggagttgagaagaccgctgagcaggttgacgcagatact
gccgtagtgggtgatgatggtgaagttgattttaaagaggacgctaagtttgctcagcat
ctaaagaaagacgaggcggtgagtgattttgcaaagtcaaagacactatctcaacagcgt
cagtatcttcccatatattctgtaagggatgaattattgcaggtagttcgagaaaatcag
gtggttgtggtagttggagaaactggttccgggaagacaacacaactgacccagtatctg
cacgaggatggatacaccacaaatggtatagtaggctgcactcaaccaaggcgtgtggca
gcaatgagtgttgccaaaagagttagcgaagagatggaaactgaacttggtgatctagtt
ggttatgcaattcgttttgaggatgtgactgggccaaacactgtaataaagtatatgact
gatggtgtgcttttgcgtgagacactcaaagatgctgatcttgacaaatatcgtgtcgtt
gtaatggatgaagcgcacgaaaggtcactaaacacagacgtgctctttggaatccttaaa
aacgttgttgcaagacggcgtgatttcaagcttatagtgacatctgccactttaaatgct
gaaaaattctcactgttttttggaagtgtaccaattttccatataccaggaagaacattt
cctgtgcaaaccttatatagtaagagtccttgtgaagattacgtggaagctgcagtgaag
caggccatgaccatacacataaccagtgctccaggtgacatactcatttttatgactggt
caagatgagattgaggcagcatgttatgccctttcagaacggatggaacagcttgtctct
actacaaagcaatcagtctccaagctgttgatacttcctatatattctcagcttcctgct
gacctgcaagctaagatatttcagaaagcggaagatggggctcgtaaatgcattgtagcc
accaacattgcagagacatctttgactgtagatggtatattttatgtcattgacacaggc
tatggcaagatgaaggtgtacaacccacgaatgggtatggacgccctccaagtgtttcct
gtaagccgtgcagctgcagatcagcgtgctgggcgtgctggaagaactgggcctggtact
tgttatcgcctctatacggaaactgcatatcaaaatgaacttctgccgagtccagtgcca
gaaatccagaggaccaaccttggaaatgttgttttgttgctcaagtctctcaaagtagat
aatttactggattttgattttatggatccaccaccccaagataacatattaaattctatg
tatcagttgtgggtattgggtgctcttgacaatgtcggaggtctaactgatcttgggtgg
aaaatggttgagtttcctctagatccacctctagctaagatgctcctgattggagagaaa
ttagaatgtcttaatgaggtcctgaccgttgtttcaatgctttcagtgccatcagtgttt
tttaggcctaaagatagggcagaagaaagtgatgctgctagggagaagttctttgtgcca
gagtctgaccatttaacactactcaatgtttaccagcaatggaaaagtaattcataccga
ggagattggtgtaatgatcattatttgcattcaaaagggttaaaaaaggctagagaagtg
aggtcacaactgctggatattctaaagacccttaaaattccactgacatcctgtgggcca
gactgggacattgtgagaaaggcaatctgttctgcatatttccacaacgctgcaagactt
aaaggaatcggggaatatgttaattgcaggaatggaatgccttgccacttgcacccaagt
agtgctctgtatggtttgggttacacgccagattatgtagtttatcacgagttaatcttg
accacaaaggagtacatgcagtgtgcaacatcagtagagcctgagtggttggctgagctg
ggtccaatgtttttctcagtcaaggactcggatacatccatgttggagcacaaaaagaaa
caaaaagaatcaaaatccgccatggaggagcagatggagaaaatgaaaaaagacgaagcg
gagaaggaaaggaggagcaaggaggaggataaacagaaaagatcaaagcagcagcagcaa
atttccatgccaggtgaacggaaagctgcttcctcctactcgaaaccaaagaaaatgggc
ttgtaa
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