Daucus carota (carrot): 108209389
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Entry
108209389 CDS
T05350
Name
(RefSeq) DNA mismatch repair protein MSH4 isoform X1
KO
K08740
DNA mismatch repair protein MSH4
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dcr03036
]
108209389
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Meiosis-specific proteins
Others
108209389
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
AAA_27
AAA_14
Motif
Other DBs
NCBI-GeneID:
108209389
NCBI-ProteinID:
XP_017235751
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Position
2:29063329..29077248
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AA seq
792 aa
AA seq
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MEDDASEKSTFVVALIENRAKEVGVAAFDLRSASLHLSQYIETSRSYQNTKTLMHFYDPM
VIIVPPNKVAPDSMVGVSELVDRFYSTTRKVVMMRGCFDDTTGAVLVKSLAAKEPSALGL
DSYYKQYYLCLAAAAATIKWIEAEKGIIITNHSLLVTFNGSYDHMNIDATSVHNLEIIEP
LQSTLWGTTNKKRSLFQTLKTTRTIGGTRLLRANLLQPLKDVGTIKARLDCLDELMTNEQ
LFFGLSQALRKFPKETDRVLCHFCFKPKKVTREVLGIDNARSSQVLISSIILLKTALDAL
PLLSTVLKDAKSVLLGNVYNSVCENEKYASIKKRIGEEIDEDVLHARVPFVARTQQCFAV
KAGIDGMLDIARRTFCDTSEAIHSLANKYREEYKLPNLKIPFNNRQGFYFSIPQKDVQGK
LPSKFIQVVKHGNNIHCSTPELASLNVRNKSAAGECYIRTEFCLEELMDAIRKEVSALTL
LAEVLCLLDMIVNSFANMISTKPVDRYTRPRFTDNGPLAIDAGRHPILESVHNEFTPNNL
FLSEASNVVIVMGPNMSGKSTYLQQVCLIIILAQIGCYVPANFATLRAVDRIFTRMGTGD
NLESNSSTFMTEMKETAFIMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAY
TIFATHMENLSELATIYPNVNILHFHVEVKNNRLDFKFQLKDGLRHVPHYGLLLAGVAGL
PGSVIETARSITSQITSKETKRMGVNSEQYHGIQKAYRVAQQLICLKYSSQDEDSIRQAL
QNLKESYIAGTL
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgacgcctctgagaaatcaacattcgttgtcgctctcattgaaaatcgtgcc
aaagaggttggtgtggctgctttcgatctgagatcagcctcgttacatctttctcagtac
atagaaactagtaggtcgtatcagaatacaaagacattgatgcatttctatgatcccatg
gtgattattgttcctcctaacaaggtggcgcctgatagtatggttggagtatcagagctt
gtagacaggttctattctacaactcggaaggttgtaatgatgcgtggttgctttgatgac
accacgggtgcggtgctcgtaaaaagtttagctgcaaaggagccctctgcacttggcttg
gatagttattacaagcaatattatctatgtttggctgcagctgctgccactattaaatgg
atagaagcagaaaaaggaattatcattacaaaccactctctacttgttacatttaacgga
tcgtatgaccacatgaatattgatgccactagcgtccataatttggaaataattgagcca
ttgcaatctactctttggggcacaaccaacaagaaaagaagtctgttccaaactctgaag
acaacaagaactattggagggactagacttcttcgagctaaccttttgcagcctctaaag
gatgttgggaccataaaagctcgacttgattgcctggatgaattaatgaccaatgagcag
ctgttttttggactctcacaggctcttcgaaagtttcccaaagaaactgatagggtcctc
tgccacttctgcttcaagccaaagaaagttacaagagaagttttgggcattgataatgcc
agaagcagccaagtgttaatatccagcattattcttctaaaaacagctctagatgccttg
ccattactgtcgactgtgcttaaggatgcgaagagcgttcttcttggaaatgtttacaat
tctgtatgtgagaatgagaagtatgcctccatcaagaaaagaattggtgaagagatcgac
gaagatgtgctacacgcacgtgttccttttgttgcccgtacgcagcagtgctttgctgtc
aaagctggaatagacggaatgctagatatcgcacgaagaacattttgcgacaccagtgaa
gcaatacacagtctcgccaacaagtatcgtgaagaatataagcttccaaatttaaagatc
ccatttaacaacagacagggattttactttagtattccacaaaaggacgtacaagggaaa
cttcctagcaagttcattcaggtggtgaaacatgggaacaatatacattgctcaacgcca
gagcttgcttcattgaatgtaagaaacaagtctgcagctggcgaatgttatataaggaca
gaattttgcctggaagaactgatggatgcaattcgaaaagaggtgtctgcactcactttg
cttgctgaagtcttatgccttctggatatgattgttaattcgtttgcaaatatgatatct
actaagcctgttgatagatatacgagaccgcgatttacagacaatggcccattagcaatc
gatgctggaagacatcctattctagagagcgtgcacaatgaatttactcccaacaattta
tttctttctgaagcatcaaacgttgtcattgtcatggggccaaacatgagtgggaaaagt
acttatcttcagcaagtgtgtctaataatcatcctagcccaaattgggtgctacgttcct
gccaactttgccactcttagagcagttgatcgcatttttacaagaatggggaccggagat
aatctcgaatccaactctagtacttttatgactgagatgaaggaaacagcttttattatg
cagaatgtttcagaaaggagtctgattgtgatggatgaactgggtagggccacttcttct
tccgatgggtttgcaattgcatggagctgctgtgaacatctattgtcactaaaagcgtat
actatatttgcaactcatatggagaacctatcagaattagctaccatctaccctaatgtt
aatattcttcattttcatgttgaagtgaaaaacaatcgtttggattttaagtttcaactg
aaggatggcctgcggcatgtaccacactatggtctattgttagcaggagtggcagggttg
ccgggctcagtgatagaaactgctagaagcatcacatcacagattacatcaaaggaaacg
aagagaatgggggtgaactctgagcagtaccatggaatccaaaaggcgtaccgtgttgca
caacagctaatatgtctgaaatattccagccaagatgaagattctatccgacaagcatta
caaaatctaaaagaaagctatattgctggaactctttaa
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