Daucus carota (carrot): 108209504
Help
Entry
108209504 CDS
T05350
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH15 chloroplastic
KO
K26077
ATP-dependent RNA helicase ISE2 [EC:
5.6.2.6
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108209504
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108209504
Spliceosome [BR:
dcr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108209504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
AAA_22
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
108209504
NCBI-ProteinID:
XP_017235931
LinkDB
All DBs
Position
2:47112254..47125973
Genome browser
AA seq
1155 aa
AA seq
DB search
MSVPFSLLSPQPLPLSLVSLPLSSLYTHRIYQTLPFRKLRAQTPLSIRTFYKFPKPLFAL
DSQLSDADDDDDEAAEEYDDISGEVSEGIEEEDDDSEDETEDSADGDGDVIAPELKSTYE
EFKWQRVERLCNEVKLFGEEIINIEELKSIYDFRIDKFQRLSIEAFLKGSSVVVSAPTSS
GKTLIAEAAAVATVARGRRLFYTTPLKALSNQKFREFRETFGDGNVGLLTGDSAINKDAR
VLIMTTEILRNMLYQSVGMVSSQGGLFQVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEV
QLICLSATVANPDELAGWIGQIHGKTELVMSSRRPVPLNWHFSTKTALSPLLDDKGTTMN
RKLSVNYLQRNSAREKSYDDEGSRRRKSRKQRENDMSPPSRNDINTFRRSQVPQVIDTLW
QLETRDMLPAVWFIFSRKGCDAAVQYIEDCLLDEYEKAEVELALKRLRAKYPDAVRESSV
KGLLRGVAAHHAGCLPLWKSFVEELFQRGLVKVVFATETLAAGINMPARTAVVSSLSKRI
ESGRTQLTANELFQMAGRAGRRGIDKRGHVVLVQTVFEGAEECCEVLFSGLKPLVSQFKA
SYGMVLNLLAGAKITRGLSEADELSISRAGRTMEEARKLVEQSFGNYVGSNVMIAAKEEL
KNIESEIEMLHLEISDEAIDRKSKKALTTMAHKEITDLQHELKAEKCVRTELRRKMELER
VSALRPLLKELEGGTLPFMCLQYSDSGGVQHLVAAVLLGSTDILDGIKLKKMVHVLDLDG
ENILINSTEGQNSEPYYYVALGSDNSWYLFTEKWIKSVYKTGFPNVALAQGDALPRDIMM
TLLEKEDTQWQKLVESDLGDLWCGEGSLETWSWSLNVPVLSSLSEKDEVLHYSQAYHDAV
ECYKEQRNKVSRLKKKITRTEGFREYKKILDMTKFTMEKIRRLKSRSKRLINRIEQIEPS
GWKEFQQVSSVIHEIRALDINTHVIFPLGETAAAIRGENELWLAVVLRNKIMLNLKPAQL
AAVCGSLVSEGIKVRPWKNNSYIYEPSTAVLKVVTVLEEQRSSIVQLQEKHGVKIPCCLD
SQFTGMVEAWASGLTWREIMMDCAMDEGDLARLLRRTIDLLVQIPKLPDVDPLLQRNAVA
ASSVMDRPPMSELAG
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcccattctctctcctctctcctcaaccgctccctttatctctcgtctctctc
ccactctcatctctctacactcaccgcatctaccaaaccctaccatttcgcaagctccgc
gctcaaacgcctctctcaattcgaaccttctacaagttcccaaagcctctcttcgccctc
gactctcagctctccgatgccgacgacgacgatgacgaagctgcggaagagtacgacgat
atctccggagaagtctccgaaggcattgaagaagaagatgatgatagtgaggatgaaacc
gaagattcagcggacggagatggtgacgtcattgcgccggagttgaagtcgacgtatgag
gagtttaagtggcaaagagttgagagactttgtaatgaagttaaattgttcggtgaagag
attattaatatcgaagagcttaagtcgatttacgattttcgtatcgataagtttcagaga
ttgtcgattgaagcatttttaaaaggttcgtcggttgtggtttcagcacctacaagcagc
ggaaagaccttgattgcagaagctgcagcagttgctactgtagctagaggaagaaggttg
ttctacaccacacctctcaaggcattgtcaaatcagaaattcagagagtttcgtgagaca
tttggcgatggtaatgtcggtcttttgacaggggactctgcaattaataaagatgctcgg
gtcctaatcatgactactgaaattcttcgaaacatgttatatcagagtgttggaatggtt
tcatcacaaggtggtctttttcaagttgatgttattgttttggatgaagtgcattatcta
agtgatatatctcgtggtactgtttgggaagagatagttatctattgtccaaaagaagtt
caacttatatgtttgtcagcaaccgtggcaaacccagacgaactagctggctggataggt
cagattcatggtaaaactgagttggtgatgtcatcaaggcgtcctgtaccactaaattgg
cacttctccacaaagacagctttgtcacccctacttgatgataaaggaacgacaatgaat
aggaagctgtcggttaactatctgcaacgaaattctgcgagagagaaatcatacgatgac
gagggatctagaagaaggaaatctagaaaacagcgtgagaatgacatgtcccctccttca
aggaatgacataaacaccttccgccgctcccaagtacctcaagttatagatacattgtgg
caacttgagacgagggatatgctgccggcagtttggtttatctttagcaggaaaggatgt
gacgcagctgttcagtatattgaagactgtcttctggatgaatatgagaaggctgaagtt
gaactggccttaaagagattacgtgcaaaatatcccgatgctgtgcgggagtcttctgtt
aagggtcttctccgaggagttgctgctcatcatgctggttgtctaccactttggaaatct
tttgtggaagagctgtttcagcgtggacttgttaaggttgtttttgctaccgaaactctt
gctgctggaatcaatatgccagcgcgaacagcagttgtttcatctcttagcaagagaatt
gaaagtggaagaacacaattaactgcaaatgaactatttcaaatggctggtcgtgctgga
cgtagaggcattgacaaaaggggtcatgttgttcttgttcagactgtctttgaaggggct
gaagagtgctgtgaggttctcttttctggactcaaacctctcgtgtcacagtttaaagca
tcatatgggatggttctgaatcttcttgctggtgcaaaaattactcgcggactaagtgaa
gcagatgaattaagcatttcccgagccggacgaactatggaagaagccagaaagttagtt
gaacagagttttggaaattatgtaggaagcaatgttatgattgctgcaaaggaggagctc
aaaaatattgaaagtgagattgaaatgcttcatttagaaattagtgatgaagctattgat
cgcaagagcaaaaaggcattaacgacaatggcacacaaggagattacagatctgcagcat
gaactaaaggcagaaaaatgtgtacggacggagttgcgtagaaagatggaattagagagg
gtgtctgctctgaggcctctactaaaggagttggaaggtggaactttgccttttatgtgt
ttgcagtacagtgattctggtggagttcaacacctggtcgctgctgttcttttgggaagc
actgatattttggatggaataaaactgaaaaagatggtccatgtactcgatcttgatgga
gaaaatattcttatcaactctactgaagggcaaaattctgaaccgtattattatgtggct
cttggttcggataactcttggtatctctttacagagaagtggattaagtcggtctacaaa
acaggatttcccaatgttgcgttggctcaaggtgatgcattgccaagagatattatgatg
accctactcgagaaggaggatactcagtggcagaaactagtagaatctgatcttggggac
ctttggtgtggcgaaggatctttggagacgtggtcgtggagtcttaatgtgccagttttg
agtagtctttctgaaaaagacgaggttttacattattcacaagcataccatgatgcagtt
gaatgttacaaggaacaaaggaataaagtttcccgattgaagaaaaagataacacgcaca
gaaggatttagagaatataagaagattctagacatgacaaagtttaccatggaaaagatt
cggcgcttgaagtctaggtcgaagcgcttgattaatcgtatagaacagatcgaaccatcc
ggatggaaagagtttcagcaggtcagcagtgtcatccacgaaattagggcactggacatt
aatacacatgtgatatttccgcttggtgaaactgcagctgcaattcgaggagaaaatgag
ctctggcttgcagtggtcttaagaaataaaataatgttaaacctgaaacctgcgcagcta
gctgctgtttgtggaagcctagtttctgaagggattaaagttcgaccttggaaaaacaac
agctatatctatgaaccttcaaccgctgttctgaaggttgtcactgttctggaagagcaa
agaagttctattgtacaactacaagaaaagcacggcgtgaagattccctgctgtttggat
agccaatttaccggtatggttgaagcttgggcttctggtttgacttggagagagataatg
atggactgtgctatggatgaaggtgatttagctcgccttttgcgaaggacaatcgactta
ctagttcagatccctaaattgcctgatgtcgaccccctgctgcaaagaaatgcagtagca
gcatccagtgtcatggaccgcccgccaatgagtgaattggcgggataa
DBGET
integrated database retrieval system
