Daucus carota (carrot): 108214436
Help
Entry
108214436 CDS
T05350
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
108214436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108214436
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108214436
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
108214436
RNA polymerase I system
108214436
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
108214436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt5-NGN
KOW
Spt5_N
DUF4438
Motif
Other DBs
NCBI-GeneID:
108214436
NCBI-ProteinID:
XP_017241918
LinkDB
All DBs
Position
3:31096216..31108063
Genome browser
AA seq
1035 aa
AA seq
DB search
MPRRDVDDDDDLEPEEDEQVYQDEEEDYDDYKSGRKRSRSQFIDDAAEEDEDEEEEEEDD
DDDEDYGGGGRKAGAPKPKKRTSGSHFFDLEAQVDSDEDDEEDEGEDDFIVDNGADLPDD
EDARRLHRRPLLPREDDQEDVEALERSIQARYARSSHTEYDEETTDVEQQALLPSVRDPK
LWMVKCAIGHEREVAVCLMQKCIDRGPELQIRSAIALDHLKNYVYIEADKEAHVREACKG
MRNIFTGSKILLVPIKEMTDVLAVESKAIELSRDTWVRMKIGTYKGDLAKVVDVDNVRQR
VTVKLIPRIDLQALANKLEGREVPKKKTFTPPPRFMNVDEAREMHIRVERRRDPMTGDYF
ENINGMMFKDGFLYKTVSMKSISTQNIQPSFDELEKFRQPGENGDGDMASLSTLFANRKK
GHFMKGDRVIVVKGDLKNLKGVVEKVEEDTVHIKPYDEGLPKTLAVSEKELCKYFEPGNH
VKVVSGATEGATGMVVTVERHLVNIVSDTTKEVIQVFSDNVVESSEVTSGKTRIGDYELH
DLVLLDNMSFGVIIRVENEAFQVLKGVHERPEVALVRLREIKYKIERKNSAQDRSRNIIA
VKDVVKVLDGPSKGKQGPVEHIFKGILFIYDRHHLEHAGFICAKSQACMVVGGRANGDRN
GDPTSRFALKPPNRVPPSPGRMPRGGHYNSGGRFGGGRGHNSLIGTSVRVRLGRYKGCKG
IVKDVKGQTVRVELEAQMKDVTVNRDEIVDTITTATPSREQQRYGAGNETPMHPSRTPMH
PYMTPMRDSGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPASWGTSPQYQPGSPP
SRTYEAPTPGSGWANTPSGNYSEAGTPRDSSPAYANAPSPYLPSTPGGQPPMTPSSAYLP
GTPGGQPMTPGGGGLDMMSPVVGGDHEGPWFLPNILVNLRRSADETSLGVVRELLPDGSC
RVALGSSGNGETVTVFPNEVEAVVPRKSDKIKIMGGAYRGSTGKLIGIDGTDGIVKLDDT
LDVKILDMVMLAKQA
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgccgcggcgagacgtagacgacgacgacgatctggagccggaagaagacgagcaagtg
taccaagacgaggaagaggactacgacgattacaagtccggacggaagcgttccagatcc
cagttcatcgacgatgcggcggaggaagatgaggacgaagaagaggaagaagaagatgac
gacgatgatgaggattatggaggcggtggcagaaaagccggtgcgcccaagcccaagaaa
cggacttccggttcgcattttttcgacttggaagcgcaggtggatagtgatgaggacgac
gaagaagatgaaggagaggatgatttcattgtggataatggagctgatctgcctgacgac
gaggatgctagacggctacatcgtcgacctctgcttcctcgtgaggatgaccaggaggat
gttgaggctcttgagagaagcattcaggctaggtatgccaggtccagtcatacggaatat
gatgaggagaccacagatgtagagcagcaagctctgttaccgtctgtgagggacccaaag
ttgtggatggtcaaatgtgcgattggccatgagcgggaggtagctgtttgcctcatgcaa
aagtgcattgatagaggacctgagttgcaaattagatctgctatagcacttgatcatctg
aaaaattacgtttatatagaagcagacaaggaagcccatgttagagaggcttgcaagggt
atgcgtaatatatttacaggcagtaagattctgcttgttcctattaaagaaatgacggat
gtccttgctgttgaaagcaaagcgattgagctttcaagggacacctgggttaggatgaaa
attggcacttacaagggggaccttgccaaggttgtggatgtggacaatgtgaggcagaga
gttacagtcaaattgattccgaggattgacttgcaggctttggcaaacaaattggaaggt
agagaagttccaaaaaagaaaacatttaccccgccgccacgttttatgaatgtcgatgaa
gctagggaaatgcatattcgtgttgagcgaaggcgagatccaatgactggggattatttt
gagaacatcaatggtatgatgtttaaagatggtttcttatacaaaactgtatcaatgaaa
tctatcagcacgcaaaatattcaaccaagctttgacgaacttgagaaatttcggcaacct
ggtgagaatggggatggtgatatggctagtttgtcaaccttgtttgcaaaccgaaagaaa
ggtcattttatgaaaggagatagagttatagttgtaaaaggtgatcttaaaaatttgaag
ggggtggtcgagaaagttgaggaagacactgtccatatcaaaccgtatgatgaaggcctt
ccgaaaacactggctgtaagcgaaaaggagctttgcaagtacttcgaacctggtaatcat
gtgaaggttgtatctggtgcgacagaaggtgctactggcatggtagtgacagttgagagg
cacctggtcaacatagtgtctgacacaactaaagaagttattcaagtattctctgacaat
gtagttgaaagttctgaagtgacatctggcaagacaagaatcggggactatgagctccat
gatttagtgttgctggacaatatgagcttcggtgtgattatacgggttgagaatgaagct
tttcaggtgcttaagggagtgcatgaaagacctgaagttgcactcgttagactcagagag
atcaagtacaagattgaaagaaagaattcagcacaagatcggtcacggaacataatagcg
gtgaaagatgttgtgaaagttcttgatggaccttccaaagggaagcaaggacctgttgaa
catatctttaaaggaatattgttcatatacgatcgtcaccatcttgagcatgctggtttt
atctgtgccaaatcccaagcttgcatggtagttgggggacgtgcaaatggtgatagaaat
ggggatccaacctcaagatttgctctcaagcctcccaatcgtgttccgccatcgcccggt
agaatgcctagaggaggccactataactctgggggtaggtttggaggtggaagaggacat
aactctttgattggtactagtgtaagagttcgcctgggtcgttacaagggctgcaaagga
attgttaaagatgttaaaggacaaacagttcgtgttgaattagaggctcaaatgaaggat
gtgacagtcaatcgtgatgaaattgttgataccattactactgcaacaccatccagggag
caacaacgatatggtgcggggaatgagacaccaatgcatccatcacgtacaccaatgcat
ccttatatgactcctatgagagattccggagccacacctattcatgatggtatgaggacc
ccaatgcgggacagggcttggaacccttacacaccaatgagtccaccaagggataactgg
gaagacggaaaccctgcatcttgggggacaagtcctcagtatcagccgggaagtcctcct
tcaagaacgtatgaagcaccaacacctggttcaggttgggccaacacccctagtggcaat
tacagtgaagctggaaccccaagggatagcagtccagcctatgccaatgcacccagccca
tacttgccgtcaactcctggcggtcagccgcctatgacacctagttcggcctacctacct
ggtacacctggggggcaaccgatgacacctggaggtggtggattggatatgatgtcccct
gtagttggtggtgatcacgagggtccttggtttcttccaaatatattggttaatttacgg
aggtctgctgatgaaacatctttaggagttgttcgggagctgcttccggatggttcctgc
agggtagctctgggttcgagcggcaacggagagacggttactgttttccctaatgaagtt
gaggcagtggttccaaggaagtcggacaaaataaagatcatgggtggtgcctatcgaggg
tcaactgggaaactcattggtattgatgggacagatggaattgtgaagctagatgataca
cttgatgttaaaatattagacatggtcatgttggctaaacaagcttaa
DBGET
integrated database retrieval system
