Daucus carota (carrot): 108219611
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Entry
108219611 CDS
T05350
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108219611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dcr04131
]
108219611
Membrane trafficking [BR:
dcr04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
108219611
BRITE hierarchy
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Ortholog
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GFIT
Motif
Pfam:
Clathrin
WD40
ANAPC4_WD40
zf-RING_2
zf-RING_11
PROPPIN
DUF2249
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
108219611
NCBI-ProteinID:
XP_017248622
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All DBs
Position
4:27296757..27309035
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AA seq
954 aa
AA seq
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MSNNQSENRTDGDNERDEEKEEDVSGEDEEEEAEDEPRLKYQRMGGSVPALLSGKSASCI
EVAERMIALGTRAGSVHILDFLGNQVKEFLAHGATVNDLCFDIEGEYIASCSDDGSVAIN
SLYTDAKLKFDYHRPMKAIALDPYYARNSSKRFVVGGLAGHMYYNIKKWIGYRDQVLQSG
EGPIHAVKWRTSLVAWANDGGVNVYDTSNDQRITYIERPRGSLRPTLLFPHLVWQDDSLL
VIGWGTSVKIALIKSNQNSSTNKTYKHIQMSHMDQVDIVASFQTSYYISGIAPFGENLVV
LAYIPEEDGEKEIASSISSHQGNARRPEVHVVTWSNDELSTDALPVHGFEHYKAKDYLLA
HAAFTGNSYTGGQWAAGDEPFYYIVSPKDVIIAKPRDAEDHISWLLQHGWHGKALEAVEA
GKGSIQLLDKVGSKYLDHLIGRRNYAKAASLCPKLLQGSASAWERWVFHFAHLQQLSLLV
PYMPTENPRLRNTAYEVALVALVTNPSFHKELLSTVKAWPPLIYSAVPVISAIEPHLNTS
YMTDALKEALAEIYVINAQYEEAFSLYADLLKPDLFEFIEKHNLHDSIREKVVQLMKIDS
KRAVTLLIQHMEMISPNEVVSQLLATEDDSRYFLYQYLHSLFEDDPHAGRDFHDMQVELY
ADHDPKVLLRFLRNCQHYKLMKAYEICVSRGLLREQVYILKRMGNSKQALVVIINELGDI
EQAIEFVSMQHDDELWVELIRQCIQNPEMVGVLLEHTDGNLDPLYIVNIIPNGLEIPRLR
DRLIKIIKDYRTETSLRRGCNNILKGDIINLLIKYYEDARRAIYMSNEEDEVRSTRDDDT
ASNLMERSRNMKTMDIKSKTRAGGRCCVCFDPFSIQNVSIIAFYCCHAYHRTCLLDSANT
VDEKKTPAPTSHEDAWYYEYEKSDPDNVDDNNINTLGSPQMRCILCTTATSTSH
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgtctaataatcagtcggaaaatagaaccgacggcgacaacgagagagacgaagaaaaa
gaagaagacgtgtccggtgaagatgaagaagaagaagccgaagacgagccgagactaaag
taccagagaatgggaggcagcgtgccggcgcttttatccggcaagtcggcgtcatgtatt
gaggttgctgagcgtatgatcgctctcgggactcgcgctggttctgtacacattctcgat
tttcttggaaaccaggtaaaggagtttttagctcatggtgctactgtcaatgatttatgc
tttgacatagagggtgaatacattgctagctgttcggatgatggatcggtggcaataaac
agtctgtatactgacgcgaaactgaaattcgattatcatcgtccaatgaaggctattgct
ctggacccatattacgcacgaaattcctccaaaagatttgttgttggcggtttagctggc
catatgtactataatataaaaaagtggattggttatcgtgaccaggttcttcaatcaggt
gaaggtccaattcatgcagtgaagtggagaacaagtctcgttgcttgggctaatgatgga
ggagtgaatgtttatgatacttcaaatgatcaacgtataacgtatattgagagaccacgt
ggaagcctacgtcctacacttctgtttcctcacttagtttggcaggatgatagtttattg
gtcattggttggggaacatctgtgaaaattgctttgataaagagtaatcagaacagtagc
accaacaagacttataaacatatacaaatgtcccacatggaccaggtggacatagtggca
tcatttcaaactagctattacatctcaggaatcgctccttttggagaaaatttggttgtt
ctagcttatattcctgaagaggatggtgagaaggaaattgcaagcagcatttcatcgcac
cagggaaatgctcggagaccagaagtgcatgtagtcacatggagcaatgacgagctttca
acagatgcactgcctgtacatggctttgagcattacaaggcaaaagattatctccttgct
catgctgcgttcacaggaaacagctacacaggtggtcagtgggcagctggtgatgagcca
ttttattatatcgtatctcctaaagatgtaattattgcgaagcctagggatgcagaagat
cacatatcttggcttcttcaacatggatggcatggaaaagctttagaagcagttgaagca
ggaaaaggaagcatacagcttcttgacaaagtgggttcaaaatatcttgatcatttaatt
gggagaagaaattatgctaaagctgcatctttatgcccaaaattgttacaaggctcagcc
tctgcatgggagagatgggttttccactttgctcatctacagcagctttctcttttggtt
ccttatatgccaacagaaaatccaaggttgcgcaatactgcatacgaggttgctcttgtg
gctctggtgacgaatccatccttccataaggaacttctgtcaaccgttaaagcctggcct
cctctaatttactctgcagtgcctgtcatttcagctatagaacctcatcttaatacttcg
tacatgactgatgctctcaaagaggcactggcggagatatatgttattaatgcacaatac
gaggaagccttttcactttatgctgatcttttgaagccagatttgttcgagttcatcgaa
aaacataacttgcatgattccatccgtgagaaggttgtacaattgatgaaaatagatagt
aaacgggcagttacattattaatccagcacatggaaatgattagtccaaatgaagttgtt
tcacaactattggctacagaggacgactccagatactttttatatcaatatctgcactct
ctctttgaagatgacccccatgcaggaagggatttccacgatatgcaggttgagctttat
gcggaccatgatccaaaggtgctgcttcgttttctccgcaactgtcagcattataagctt
atgaaggcatatgaaatatgtgttagcagaggtctgctgagggagcaagtttacattctt
aaaagaatgggaaattccaaacaggcccttgtagttattattaatgaactaggggatata
gaacaggccatagagtttgttagtatgcaacatgacgatgaactgtgggtagaattgatc
agacaatgtattcagaatcctgaaatggttggggtgttgctggagcataccgatggcaat
cttgatcccctctatattgtaaatatcattcccaatggcctggagattcctcggctaagg
gatcgtttaattaaaatcataaaggactacaggaccgaaacttctctaaggcgtggttgt
aataatatacttaagggtgatattattaacctgttaattaaatactatgaggatgcaaga
cgtgccatctacatgagcaatgaagaagatgaagtgcgttccacaagggatgacgataca
gcgtctaatttgatggagagatcaaggaacatgaaaaccatggatatcaagtcaaaaact
agagcaggcgggaggtgctgtgtgtgttttgatcccttttccattcagaatgtatccatc
attgcattctactgttgtcacgcatatcataggacttgcctcttggattctgctaataca
gttgatgagaagaaaacgccagcccctacttcccacgaggatgcatggtattatgagtac
gagaagagtgaccctgataatgttgatgacaataatattaatactttaggttccccgcag
atgcgatgtatattgtgcaccaccgccacaagtacatcacattga
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