Daucus carota (carrot): 108223221 Help Entry 108223221         CDS       T05350                                  Name (RefSeq) DNA ligase 1-like isoform X1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism dcr  Daucus carota (carrot) Pathway dcr03030   DNA replication dcr03410   Base excision repair dcr03420   Nucleotide excision repair dcr03430   Mismatch repair Brite KEGG Orthology (KO) [BR:dcr00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     108223221    03410 Base excision repair     108223221    03420 Nucleotide excision repair     108223221    03430 Mismatch repair     108223221  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:dcr03032]     108223221    03400 DNA repair and recombination proteins [BR:dcr03400]     108223221 Enzymes [BR:dcr01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      108223221     6.5.1.6  DNA ligase (ATP or NAD+)      108223221     6.5.1.7  DNA ligase (ATP, ADP or GTP)      108223221 DNA replication proteins [BR:dcr03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     108223221  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      108223221 DNA repair and recombination proteins [BR:dcr03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      108223221    NER (nucleotide excision repair)     Other NER factors      108223221    MMR (mismatch excision repair)     Other MMR factors      108223221 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase HTH_36 mRNA_cap_enzyme Motif Other DBs NCBI-GeneID:  108223221 NCBI-ProteinID:  XP_017252848 LinkDB All DBs Position 5:33010121..33021395 Genome browser AA seq 797 aa AA seqDB search MITLHSGLFLLPRTPNLSTIARGLSPILRPNSSFFLKPPLFTSPNLKFPMSSSRPSAFDA LMSKARAAAKKKPQSEASPAKKRKTQELVSVKEVENASLDDAHQVFDKKSKQENVVKCGD NVGTEVLANGCKEGKVNLSLDEKLAVKKAEAVSLDESIAQLKNKPANFDPKKAAFWGEGK KVPFSFVTRVFDAVDKESGRIVITEIVCNMLRTVIQTSPDDLLPVVYLLANRIAPAHEGL ELGIGDASIIKALAEACGCNEAQIRKQYKDLGDLGLVAKASRSSQSLMRKPEALTVTKVF NTFQLIAKESGKDSQEKKKNHIKALLVAATDFEPLYMIRLLQTKLRIGLAEQTLLAALGH AAYYSEKRFKPPANIDSPSEEAAKIVKQVYSVLPVYDKIIPAILTGGVWDLPKACCFTPG IPIGPMLAKPTKGVSEILDKFQDMEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGK FPDVVSALSRLKKSSVSSFVLDCELVAYDREKKKILPFQVLSTRARKNVMISDIKVEVCI FAFDILYLNGQTLLQEQLNVRKEHLYKSFEEEPCYFQFATAMTSTDLEEIQKFLEDSVDA SCEGLIIKTLSRDATYEPSKRSNNWLKLKKDYMESIGDSLDLVPIAAFHGRGKRTGVYGA FLLACYDSSSEAYQTICKIGTGFTEQVLEERSTSLRSKVIPKAKSYYRYADKISPDVWFE TTEVWEVKAADLTISPVYCAAIGIVDSEKGISLRFPRLVRVREDKAPEQASSSEQVAEMY KAQKHTQKHYEDDDKDE NT seq 2394 nt NT seq  +upstreamnt  +downstreamnt atgattacactccattcaggactctttctccttcctcgcacacccaatctctccactatt gcgcgtggtctctctccgattctcagacccaattcgtcattttttctcaaaccccctctt tttacaagccctaatttgaaattccccatgtcttcttcacgcccttcggctttcgatgct ttaatgtcaaaagctcgagccgctgcgaagaaaaaaccccagtccgaggcttctccagcc aagaaacgcaagacccaggagttagtttctgtaaaagaggttgagaacgcgagtttggat gacgcgcatcaggtgtttgataaaaagagtaaacaagaaaatgttgtgaaatgtggtgat aatgtgggtactgaggttttggcaaatgggtgcaaggaaggtaaggtaaatttgagtctg gatgagaaattggcggttaagaaggccgaggctgttagtttggatgagagtattgcacag ttgaagaataagccggcgaattttgatccaaagaaagctgcattttggggggagggtaag aaagttccgttttcgtttgtgactagagtgtttgatgctgttgacaaggagtcagggaga attgtgattactgagattgtgtgtaatatgttgaggactgtgatacagacgtcaccggat gatttgcttccggttgtttatcttttagcgaatcggatcgcacctgctcatgaagggttg gagcttggaattggggatgcgagtattattaaagcgctggctgaagcttgtggatgcaat gaagctcagattaggaagcagtacaaagatttgggagatttgggattggttgcaaaagcc agccgctcatcacagtctttgatgcgcaaacctgaggcattaacagtcactaaggtcttt aacacatttcagctcattgccaaggaatctggcaaggatagtcaagagaagaaaaagaac catatcaaggcactccttgttgctgctactgattttgagcctctgtatatgatccgctta ctgcagacaaaattacgaattggtttggcagagcaaactctattggctgctctgggtcat gctgcttattacagtgaaaagcgtttcaaacctcctgcaaatatagattctccttcagaa gaggctgcaaagatagttaaacaagtttactctgtgcttcccgtctatgacaaaataatc cctgccatccttactggtggtgtatgggatctcccgaaggcatgctgttttacacccggg attcctattgggcctatgctagcaaaaccaacgaaaggagtgtctgagattttggataag tttcaagatatggaattcacatgcgaatacaagtatgatggagaacgtgctcagatacat tacttggagaatggttcagttgagatttacagtcgaaatgctgaaagaaatacgggaaag tttccagatgttgtttctgctctttcaagactaaagaagtcatctgtttcatcatttgtt ttggattgcgagcttgtcgcttatgaccgtgagaaaaagaaaatcttacctttccaggtt ttaagcacacgtgcccgcaaaaatgtaatgatcagtgacatcaaagttgaagtttgcatt tttgcatttgatattctttacctgaatggtcagacacttctacaggagcagcttaatgtt cgtaaggaacatctgtataagtcatttgaggaagaaccctgctattttcagtttgctaca gcaatgacatccactgatcttgaggaaatacagaagtttcttgaggattctgtcgatgca agctgcgagggactgattatcaaaacattaagtagagatgctacatatgaaccttcaaag aggtcaaataactggctcaaactaaagaaagattacatggaaagtattggcgattcactt gatctagtacctattgctgctttccatggacgagggaaacgaactggtgtatatggcgct tttctgcttgcttgttatgatagcagcagcgaagcatatcaaaccatttgtaaaatcggc actggatttactgaacaagtgcttgaggagagatctaccagtctacgttctaaagtgatc ccaaaggcaaagtcctactatcgttatgcagataagatttctccagatgtatggtttgaa acaaccgaggtttgggaggtcaaagctgcagatttgaccatcagtcccgtctattgtgct gccatcgggattgtggattctgagaagggcatctctctccgatttccacggctggttcgt gtacgagaagacaaggctccagagcaagcttcatcatcggaacaggtagctgaaatgtat aaagctcaaaagcacacccaaaagcactacgaagatgatgataaggacgagtga

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