Daucus carota (carrot): 108223222
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Entry
108223222 CDS
T05350
Name
(RefSeq) U1 small nuclear ribonucleoprotein 70 kDa-like
KO
K11093
U1 small nuclear ribonucleoprotein 70kDa
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108223222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108223222
Spliceosome [BR:
dcr03041
]
Complex A
U1 snRNP components
U1 snRNP specific factors
108223222
Complex B
108223222
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
U1snRNP70_N
Motif
Other DBs
NCBI-GeneID:
108223222
NCBI-ProteinID:
XP_017252850
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All DBs
Position
5:13840038..13846351
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AA seq
375 aa
AA seq
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MGDYNDSFMRNGANVQGRVKNQNQNRADVLEAKALASGHPTGLTNNLLRLFEPRPPLEYK
PPLQKNKCPPYTGMAQYVKDFAEPSQPDYAKPLEKSETPAQRRARVHQIRLVAGAKKAAE
ELEKYDPSNDPNVSGDPYKTLFVARLNYETTESRIKREFEAYGPIKQVRLVADKETNKPR
GYAFVEYRHTRDMKAAYKQADGRKLDNRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGE
DVNQMYSARAQHRSAGPPRSEEPRVRDDRKREKSRERGKDRVREHDRHRERDHRDDRHHR
DRGRTRERDIGRDRTRDRDRGREREDRDRGRDRYREERDRGRDNELTEDRGLSHDKNYDH
DRVEVLSVDLQRGGW
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgggggattacaacgattcgttcatgcgtaacggcgccaacgtgcagggccgcgttaag
aatcagaatcagaatcgtgctgatgttttggaggcgaaagcgcttgcctcaggtcatcca
actggtttgacaaataaccttttaaggctatttgagccaaggcccccacttgagtacaaa
ccaccgttgcagaagaacaaatgcccgccatatacaggaatggcgcagtatgttaaagat
tttgctgagccgagtcaaccagattatgccaagccattggagaagagtgaaactcctgca
caaaggagggcaagggtccaccagataaggctggtagcaggtgcaaaaaaggctgccgag
gagcttgaaaaatatgatccaagtaatgatccaaatgtttctggagatccatacaagaca
ctatttgtggctaggctgaactacgagacaactgaaagcagaatcaaaagggagtttgag
gcttatggtccaattaaacaggttcgcttggttgcagataaagagacaaacaaaccaaga
ggctatgcttttgtagaatataggcatacaagagatatgaaagctgcttataagcaagct
gatggaaggaagcttgataatcgaagggttctagttgacgttgagcgtggcagaacagtt
ccaaattggcgacctcgtaggcttggtggtgggcttggcacaactagggttggaggtgaa
gatgttaatcagatgtactctgcaagagctcaacatcgatcagctggaccacctcgatct
gaggagccaagagttcgagatgaccgcaaaagggagaagtctcgtgaaagaggtaaggat
agagtaagggaacatgataggcatagggaacgtgatcatagggatgatagacaccataga
gatcgtggaaggaccagagaaagagacatcggtcgagatcggactagagaccgagaccgt
ggtagagaacgtgaagatcgtgatcgtggtcgtgaccgttatcgcgaggagagggatagg
ggtcgggataatgaattgacagaggatcgtggtctctcccatgacaaaaattatgatcac
gaccgtgttgaggttctgtctgtggacttgcagcgggggggatggtaa
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