Dictyostelium discoideum (cellular slime mold): DDB_G0274493
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Entry
DDB_G0274493 CDS
T00245
Symbol
lig1
Name
(RefSeq) DNA ligase I
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03030
DNA replication
ddi03410
Base excision repair
ddi03420
Nucleotide excision repair
ddi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DDB_G0274493 (lig1)
03410 Base excision repair
DDB_G0274493 (lig1)
03420 Nucleotide excision repair
DDB_G0274493 (lig1)
03430 Mismatch repair
DDB_G0274493 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ddi03032
]
DDB_G0274493 (lig1)
03400 DNA repair and recombination proteins [BR:
ddi03400
]
DDB_G0274493 (lig1)
Enzymes [BR:
ddi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DDB_G0274493 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
DDB_G0274493 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
DDB_G0274493 (lig1)
DNA replication proteins [BR:
ddi03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
DDB_G0274493 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
DDB_G0274493 (lig1)
DNA repair and recombination proteins [BR:
ddi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DDB_G0274493 (lig1)
NER (nucleotide excision repair)
Other NER factors
DDB_G0274493 (lig1)
MMR (mismatch excision repair)
Other MMR factors
DDB_G0274493 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
HTH_15
Motif
Other DBs
NCBI-GeneID:
8619554
NCBI-ProteinID:
XP_644124
dictyBase:
DDB_G0274493
UniProt:
Q869E1
LinkDB
All DBs
Position
2:complement(4400712..4404415)
Genome browser
AA seq
1192 aa
AA seq
DB search
MQSSMWSFLQKKEGGEIEDIEKKISNAQELNKLKTSPKKKREAVVKEKVEKKEKKETKPK
RKSSKKNKEEEEEEEQEEQDGEEEQEEEEEYQQQDEEIEEDINGEEEMELDENEKEKNKK
KKQSLKTKENKESKSSSSSKKTIENKETKKPEKQSSKQSNNLKRLKRKKMDDDEEDEEDE
NKTDDNDLDDMLDDDSDNEKDSISSKDKEYKEKVLKDKEKKEKEKKEKELKEKESKEKEK
KEKEKKEKEEKDKKEKELKEKELKEKELKDKKEKELKEKEKELKDKEKKEKELKEKEKKE
KEEKEKEKKEKKEKELKEKEEKEKKEKELKEKELKEKELKEKELKEKELTSPKKETIDIS
DLFKRANAEAKSSVPTSTSKNSKTNKKQKVDHKPTATTKKPSPVLEAKQSTTTTTTTTTT
STATTISSKSISSPSKKEEKEVITSKKQVEATKVEVKKEKEKEKEKEKEDDEEEEEEEED
DDEKLEDIDEEEYEEEEEEDEEGISENEEEEEKKSTQIKSKFIKKVPISKKKGNAKTIQA
DLKVIGKYRPIEDAQWKKGEAVPYMVLAKTFEMMESTSSRLIIIEHLANLFRSIMLLSPK
DLVMTIYLSINKIGPSYQSKELGIGEHVLIKSLAESTGRSVDVIKQELTEVGDLGIIAQN
SRSTQTLMGKPTPLTIQSVFKTFQQIADLSGTGGQQKKKDLIKKLLVSCKDCETLYIIRS
LQGKLRIGLAERSVLMALAKSVLVTPPIDGSGQQIFDIRKQMKQEEFEERYQNVVSKVTR
AYSQLPNYDLFVPHLIAVNGIDNILSTCSLKVGIPVKPMLAQPTTGISQMLDRFSDMEFT
CEFKYDGERAQIHRLPDGTTHIYTRNLEDYTQKYPDIVANVTKFVGPNVKSFILDCEAVA
FDAATKKILSFQVLSTRARKSVQLSQIKVPVCVFAFDLLYLNGQSLIDEPLIKRREHLVE
NFIASDGVFAFAKYSNISDVNDIQSYLEEAVEGNCEGLMVKTLKEKSIYEPSRRSYNWLK
IKKDYMQGMTDSLDLVPIGAWYGKGKRTGTYGAYLLACYDENNEEFQTLCKIGTGFSDEQ
LTTFTSQLKPHLINQPRNQFRFSDSIKPDVWFSPSCVWEVLAADLSISPVHTAASGILDP
NKGIALRFPRFIRIRPDKSPEDATSSDQVVDMYQNQKINSQSSKINEKDEDY
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcttctatgtggagtttcttacaaaagaaagaaggtggagaaattgaagatata
gaaaagaaaattagtaatgcacaagaattaaataaacttaaaacttcccctaaaaagaaa
agagaagcagtggttaaagaaaaagttgaaaagaaagaaaaaaaagaaacaaaaccaaag
agaaagagttcaaaaaaaaataaggaagaagaagaagaagaagaacaagaagaacaagat
ggtgaagaagaacaagaagaagaagaagaatatcaacaacaagatgaagaaattgaagaa
gatataaatggtgaagaagaaatggaattagatgaaaatgaaaaagaaaagaataaaaag
aaaaaacaatcattaaaaactaaagaaaataaagaatcaaaatcatcatcttcttcaaag
aaaacaatagaaaataaagaaactaaaaaacctgaaaaacaatcttcaaaacaatcaaat
aatttgaaaagattaaaaagaaagaaaatggatgacgatgaagaagacgaagaagatgaa
aataaaactgatgataatgatttagatgatatgctcgatgatgatagtgataatgaaaaa
gattcaatttcttcaaaagataaagagtataaagaaaaagttttaaaagataaagagaaa
aaagaaaaagaaaagaaagaaaaagagttaaaagaaaaagaatcaaaggaaaaagaaaag
aaagaaaaagaaaaaaaagaaaaagaagaaaaagataaaaaagaaaaggaattaaaagaa
aaggaattaaaagaaaaggaattaaaagataaaaaagaaaaggagctaaaagaaaaagaa
aaagaactcaaagataaagagaaaaaagaaaaagagttaaaagaaaaagagaaaaaagaa
aaggaagaaaaggaaaaggagaaaaaagagaaaaaagaaaaagaattgaaagaaaaagaa
gaaaaagagaaaaaagaaaaggaattaaaagaaaaggaattaaaagaaaaggaattaaaa
gaaaaggaattaaaagaaaaggaattaacttcaccaaaaaaagaaactattgatatttca
gatttatttaaaagagcaaatgctgaagctaaatcgtcagtaccaacctcaacatctaaa
aacagtaaaactaataaaaaacaaaaagttgatcataaaccaacagcaacaacaaaaaaa
ccatcacctgtacttgaagcaaagcaaagcaccacaaccaccaccaccacaactactacc
tctaccgccacaactatttcttcaaaatcaatttcaagtccatctaaaaaagaagaaaaa
gaagtaataacttcaaaaaaacaagttgaagcaacaaaagtagaagttaaaaaagaaaaa
gaaaaagaaaaagaaaaagaaaaagaagatgatgaggaagaagaggaagaagaagaagat
gatgatgaaaaattagaagatattgatgaggaagaatatgaagaagaagaagaagaagat
gaagagggaattagtgaaaatgaagaagaagaagaaaagaaaagtacacaaattaaaagt
aaatttattaaaaaagtaccaatttcaaaaaagaaaggtaatgcaaaaactattcaagct
gatttaaaggttattggaaaatatagaccaattgaggatgcacaatggaaaaaaggtgaa
gctgtaccatatatggtattagcaaaaacctttgaaatgatggaatcaacatcatcaaga
ttaattattattgaacatttagccaatttatttagatcgattatgttattatcaccaaag
gatttggttatgacaatttatttatcaatcaataagattggtccatcctatcaatctaaa
gagttgggtattggtgaacatgttttaattaaatcattagcagagtccactggtagatca
gtggatgttattaaacaagagttgacagaggttggtgatttgggtataattgcacaaaat
agtagatccactcaaactctaatgggtaaaccaacaccattgaccattcaatcggtgttc
aaaacatttcaacaaattgctgatctctctggcacaggtggccaacaaaaaaagaaagat
cttataaagaaactattggtatcatgtaaagattgtgaaacactttatatcattcgttca
ttgcaaggtaagcttagaattggtctagccgaacgttcagtattgatggcattggctaaa
tccgtattggtaacaccaccaattgatggtagcggtcaacagatatttgatattagaaaa
caaatgaaacaagaggaatttgaagaacgttatcaaaatgttgtatcaaaggtaactcgt
gcatatagtcagttaccaaattatgatttatttgtacctcatttaattgctgtgaatggt
attgataatattttgagtacatgttcattgaaagttggtattccagtgaaaccaatgtta
gcacaaccaaccactggtatcagtcaaatgttggatcgtttctctgatatggagtttact
tgtgaattcaaatatgatggtgaacgtgctcaaatccatcgtttaccagatggtaccact
catatttataccagaaatttagaggattacactcaaaaatatccagatattgttgcaaat
gttactaaattcgttgggccaaatgtgaaatcattcattttagattgtgaagcagttgca
tttgatgctgcaacaaaaaagattttatcatttcaagttttatcgactagagcaagaaaa
agtgtacaattgtcacaaattaaagtaccagtttgtgtatttgctttcgatttactctat
ttgaatggtcaatcattaattgatgaaccattaatcaaacgtcgtgaacatttagttgaa
aatttcattgcatccgatggtgtatttgcttttgctaaatattcaaatatttccgacgta
aatgatattcaatcctatcttgaagaggctgtcgagggtaattgtgaaggtttaatggtg
aaaactttgaaagagaaatcaatctatgaaccatcacgtcgttcttacaattggttaaag
attaaaaaagattatatgcaaggtatgaccgatagtttagatttggtacccattggtgca
tggtatggtaaaggtaaaagaacaggtacttatggtgcttacttgttggcttgttatgat
gaaaacaatgaagaattccaaacactctgtaagattggtactggtttctctgatgaacaa
ttgactacttttaccagtcaattgaaacctcatctaattaatcaaccacgtaatcaattc
cgtttctctgattcaattaaacctgatgtttggttctctccaagttgtgtttgggaggta
ttggccgctgatttatcaatctctccagttcatacagctgcatctggtattttggatcca
aataaaggtatcgctttacgtttcccacgtttcattagaattcgtcctgataaatctcct
gaagatgcaactagttctgatcaagttgttgatatgtatcaaaatcaaaaaattaatagt
caatcttcaaaaattaatgaaaaagatgaagattattaa
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integrated database retrieval system
