Desulfitobacterium dichloroeliminans: Desdi_2684
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Entry
Desdi_2684 CDS
T02390
Name
(GenBank) ATP-dependent DNA ligase LigD polymerase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ddl
Desulfitobacterium dichloroeliminans
Pathway
ddl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ddl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Desdi_2684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddl03400
]
Desdi_2684
Enzymes [BR:
ddl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Desdi_2684
DNA repair and recombination proteins [BR:
ddl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Desdi_2684
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AGA70099
UniProt:
L0F8G4
LinkDB
All DBs
Position
complement(2723797..2726244)
Genome browser
AA seq
815 aa
AA seq
DB search
MTGRLSEYNEKRNFTKTLEPEGKIDSDEQLRFVVQHHLARNDHYDLRLEWQGALLSWAVP
KGPSYNTHDKRLAVQVEDHPLEYRNFEGMIPKGEYGGGVVMLWDEGLWEPRGNVDEGLIE
GSLKFVLHGRRLKGKWALVRLKSKDGETRDNWLLLKEKDEHAKNEVGIATFTTSIRTDRS
MSEIAAGAETKITRNPFDRADVQLAKLITKVPVGEDWLYELKYDGYRILAFVEGNSVRLM
TRNDNDYTRRFSGVATALITMAAGRAMILDGEMTITNPEGKTDFQALQNYLKNPQEQSLT
YIVFDLLALDGMDLRGRPLIDRKAALEALLKDAPGSIYYSRHVIGKGKESFLAACEAGLE
GIIGKRMDSLYRSTRNGDWIKLKCEQRRNFVIGGYTLSDKKTSGVSSLLLGIYEGEDFIY
CGRAGTGFSERERKKLAEHFRSLHKAEPSFKEAPQARSNERITWLEPQLVAEIKFAEWTE
DQRLRQASFKGLQADKHPRDIQKETTINELDSPQEAENPKELESKMVTKDNSIVIAGIKI
TNPDKVMFEEPKISKADVVRYYEMVSERMLPHVSYRVLSIVRCPKGISQTCFYKKHPGPD
SKGIITLPITTGSGEIEDYFYIENKLGLISEAQMGTLEFHTWGSRIEVLEKPDLMVFDLD
PDEGMDLSRVRQGVRDVKSILSELSLNAYLKTSGGKGYHVVVPLEPSVSWEVFYSFARGV
AEVMEQKWPDRYTSNVRKAKRAGKIFIDWIRNGRGATSIAPYSLRTRKGAKVSMPIDWDE
LDTIAPDGIDMAEALARMAGADPWQDFFRAQQKLK
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgacggggcggctaagtgaatacaacgaaaaaagaaattttactaaaacgctggagcct
gaagggaaaatagattctgatgagcagttaagatttgttgtccaacaccatctagcccgc
aatgaccactatgatttgcgcttggaatggcagggggctcttttgagttgggctgtacct
aagggtccttcctataatacacatgacaagaggcttgctgtccaagtggaggatcaccct
cttgaatacaggaactttgaggggatgattcccaagggcgaatatggtggcggcgtggtc
atgctctgggatgagggcttatgggagcctcgtggcaatgtggatgaagggctgattgaa
ggtagcctgaagttcgttctgcacggaagacggcttaagggaaaatgggccttggtccgg
ctgaaatcgaaggacggagagacgagggataactggcttttgttgaaagaaaaagatgaa
catgccaaaaacgaagtagggattgccacatttaccaccagcatccggaccgaccgctcc
atgtcagaaatcgcagccggtgccgagacaaaaatcacaaggaacccctttgacagagcg
gatgtacaactggccaagctgataaccaaggttcctgtgggtgaggattggctttatgag
ttgaagtatgacggctatcggattttggcgtttgtggaaggcaatagcgtccggttgatg
actaggaacgacaatgattatactagacggttttcaggggtggctactgccctcatcact
atggctgccggaagggcaatgattctcgatggggaaatgaccatcacgaatcctgagggc
aagacagatttccaggcgctgcaaaactatctgaagaacccccaggagcaaagcttaacc
tatatcgtctttgatcttctggcgttagatggtatggatctgcgaggacggccccttatc
gacagaaaagctgcccttgaagctttgctaaaggatgcgcccggaagcatttactacagc
cgacatgttatcggcaagggaaaggagagctttcttgctgcctgtgaggcaggtctggag
ggaatcatcggtaaaagaatggattccttatacaggtcaacgagaaacggggactggatc
aaactgaaatgtgagcaaaggcggaattttgtcattgggggatatacgctatccgacaaa
aaaaccagcggagtaagctcgcttctgcttggaatctatgaaggcgaggatttcatctat
tgcggacgcgccggaacggggttcagtgaacgtgaaagaaagaagctggcggaacatttc
agaagcctacacaaggcggagccgtctttcaaagaagcaccccaggcaagatctaatgaa
agaattacttggcttgaacctcaactggtcgcggaaattaaatttgctgaatggacagaa
gatcagcggttgaggcaagcaagctttaaaggcttgcaggcagataagcatcctcgggat
atccaaaaagaaacgaccatcaatgaattagatagtccccaagaagcggagaatccaaaa
gaattggagagcaaaatggtaacaaaggacaacagtatcgtcatcgctggaataaaaatt
accaatccggataaggtgatgtttgaagaacctaaaatttcaaaagcggatgtggtccgc
tattacgaaatggtgtcggaacgtatgctgccccatgtaagttaccgagtccttagtatt
gtacgctgtcccaagggcatctcgcagacttgcttctataaaaagcatcccggtccggac
agcaagggaatcatcactcttccgatcaccaccggcagtggggaaattgaagattatttc
tatattgagaacaaactgggacttatttcagaagcacagatggggacgctagaatttcat
acatggggaagccgtatcgaggtactggaaaaacctgatctgatggtattcgatctagat
ccggatgaaggaatggatctaagcagggtgcgtcagggggtgcgggatgttaaaagtatt
cttagtgagctttccctgaacgcctatcttaagaccagcggcggcaaaggttatcatgtg
gttgttcctttagaaccctccgtttcctgggaagtgttttatagctttgctcggggtgtt
gccgaggtgatggagcaaaaatggcctgaccgatatacaagcaatgttagaaaggcaaag
cgagcaggcaaaatatttatcgactggattcgcaacggcagaggggctaccagcattgcc
ccctattccttaagaacaagaaaaggagctaaggtatcgatgcctatcgactgggatgaa
cttgacacgattgccccagacggtatcgatatggcggaggcgctcgcgaggatggccggc
gctgacccttggcaagatttctttcgagctcagcagaagctaaaatga
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