Dehalobacter sp. CF: DCF50_p2127
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Entry
DCF50_p2127 CDS
T02279
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dec
Dehalobacter sp. CF
Pathway
dec03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DCF50_p2127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dec03400
]
DCF50_p2127
Enzymes [BR:
dec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DCF50_p2127
DNA repair and recombination proteins [BR:
dec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DCF50_p2127
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AFV06130
UniProt:
K4L3M4
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All DBs
Position
2180231..2181148
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AA seq
305 aa
AA seq
DB search
MNLEFDGKTLNITNPEKLLWPDLGIRKLDYLKILLELAPYLLPHVQDRLLTTIRYPDGFQ
GKSFFQKNIPDYAPGWIPTIEWRDNQYIILESEAILIWLGNQACLEFHIPFNPYDRDQYP
SALVFDLDPSEGQTFEDVTEAALLIFEELKALQITSYIKTSGASGLQIHIPTGGKYDYNT
ARKINEFFAVYFSQKYPRQITLERSVAKRGHKLYFDYLQMWQGKTIISPYSPRATAYASV
AAPLEWQELRHGVKPQDFNLLNISGRLKDKGDLFAPLLNKKNGQDRKNSQDLDFILERIV
AHRQP
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggaattcgacggcaaaacgctcaatataaccaaccctgaaaaattattatgg
cctgaccttggtatccgcaagcttgattatttgaaaatcctgctggaattagccccgtac
cttctgcctcacgtccaagaccgtctactgacgacgatccgttatcctgatggtttccag
ggcaagtccttcttccagaaaaatatccctgattatgcccctgggtggattccgacgatc
gaatggcgggataatcagtatatcattttagaatcagaagcaatcctcatttggctcgga
aaccaggcgtgtctggaattccacattccatttaacccatatgacagggatcagtatcct
tctgcactggttttcgatctggacccttccgaaggtcagacctttgaggatgtcacggaa
gcggccctgctgatttttgaagagcttaaagcgcttcagattacaagctatatcaaaact
tccggggcaagcggacttcagatccatattccgacaggcgggaagtatgattacaatact
gccagaaaaatcaacgaattttttgcggtttatttcagccagaaataccctcggcaaatt
accctggagcgcagtgtcgccaaaagaggccataagctctattttgactatctgcagatg
tggcagggcaaaaccatcatcagtccatattcaccaagagcaacagcctacgcctccgtt
gccgctccgctggaatggcaagagctgcggcacggggtcaaaccccaggattttaatctg
ctgaatatcagcggcaggctgaaggataaaggggatcttttcgctccgctgcttaataaa
aaaaatggacaagacaggaagaatagccaggatctcgattttatccttgaacggattgtg
gcccacagacaaccctag
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