Delftia sp. Cs1-4: DelCs14_2489
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Entry
DelCs14_2489 CDS
T01497
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
del
Delftia sp. Cs1-4
Pathway
del03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
del00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DelCs14_2489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
del03400
]
DelCs14_2489
Enzymes [BR:
del01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DelCs14_2489
DNA repair and recombination proteins [BR:
del03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DelCs14_2489
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AEF89502
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All DBs
Position
complement(2842680..2845307)
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AA seq
875 aa
AA seq
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MPATRSKSQASRPARPTKGATKAATPQASLALYRQKRDFTRTPEPSAEPSSETIAGQPGA
GALQFVIQKHWASHLHYDFRLELDGSMKSWAVPKGPSYDPADKRMAVQVEDHPMAYNRFE
GQIPPGQYGAGKVIIWDRGTWLPEGDAAEGYRKGKLKFELRGHKLQGRWALVRMRGKDDA
KKPAWLLIKEHDGLERAASEFNVVEDMPDSVAGLPLPTATAPITTPVTTPVATPVAAPMP
QSIAPQLATLVDHAPADAGQWIFESKFDGYRLLARIEDGAVRLFTRNGKDWTTKMPALAR
AFAALPLQSGWVDGEVLMLDSDSRPDFQALQNAFDGERTDHLVFFAFDLLWQDGQDLRPQ
PVEQRRQQLQSLLHKAPSDRLRFSEAFDAPPADLVAAACQLGLEGVIGKRRGSAYASRRS
ADWIKLKCGLRQEFVIAGYTDPQGTRTGLGALILAVHGEDGQLRAAGKVGTGFNRRTLAD
LRQRLERLATGTSPLADSRGLGSGVHWVRPTLLAEVSFAQWTEDGQVRHAVFHGLRADKP
ARSIVKEEPQHVPSTASSASAAAMPGAARPKTRNARAARLPASMTITHPERVIDPSTGIT
KMDLARYYATVAPFMITHLKSRPVAMVRAPDGIEGELFFQKHLDQAPLQGIAALSPELDP
GHAPLMEVSRREGLVAAAQMNTIEWHTWNARKDRIDRPDRMTFDLDPGEGVPWQQVQEAA
SLLHVLLQELELPAFLKTSGGKGLHVVVPIKRLLDWDTVKAFSQAVVQHLAHAVPQRFVA
KSGPRNRVGKIFVDYLRNGFGATTACAWTARARPGMGISVPVAWNELDRLTGGAHWTIRS
VDQRLRLGNSPWEHYGTAAVGLGRAMKALGFEAQR
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgccggccacgcgcagcaagtcccaggcatcccgcccggcccgccccaccaaaggggcg
accaaggcggcgacaccccaggcctcgctcgcgctgtaccggcaaaagcgcgacttcacg
cgcacaccggaaccttcggcagaaccttccagtgagacgattgcagggcagcccggcgcg
ggcgccctgcaattcgtcattcaaaagcactgggccagccacctgcactacgactttcgg
ctggagctggacggcagcatgaagagctgggccgtgcccaagggccccagctacgacccg
gccgacaagcgcatggccgtccaggtggaagaccaccccatggcctacaaccgcttcgag
ggccagattccaccgggacagtacggcgcgggcaaggtcatcatctgggaccgtggcacc
tggctgcccgaaggcgatgcggccgaaggctatcgcaagggcaagctcaagttcgaactg
cgcggccacaagctgcagggccgttgggccctggtgcgcatgcgcggcaaggacgacgcc
aaaaagcccgcctggctgctgatcaaggagcacgacggcctggaacgtgctgccagcgaa
ttcaacgtggtcgaggacatgcccgacagcgtggccggccttcccctgcccaccgccaca
gcgcccatcaccacacccgtcaccacgcccgtcgctacgcccgtcgccgcgcccatgccg
cagagcatcgccccgcagctggcaaccttggtggaccatgcacctgcagatgccgggcaa
tggatcttcgagagcaagttcgacggctaccggctgctggcgcgcatcgaggacggcgcc
gttcgccttttcacacgcaacggcaaggactggaccaccaaaatgcccgccctggcccgc
gcctttgccgcgctgcccctgcaatcgggctgggtggatggcgaggtgctcatgctggac
agcgacagccgccctgacttccaggccctgcaaaacgcctttgacggcgagcgcaccgac
cacctggtgttcttcgcgtttgacctgctgtggcaggacggccaggacctgcggccccag
cccgtggagcagcgccgccagcagttgcagtccctgctgcacaaggcgccttcggaccgc
cttcgcttcagtgaggcctttgacgccccgcccgccgatctggtggccgccgcctgccag
ctgggcctggagggcgtgatcggcaagcggcgcggcagcgcctatgcctcgcggcgcagt
gcggactggatcaagctcaagtgcggcctgcgccaggaattcgtgatcgcgggctacacc
gatccccagggcacgcgcacgggcctgggcgccctgatcctggccgtgcatggcgaggac
ggtcagctgcgcgcggcaggcaaggtgggcacggggttcaacaggcgcaccctggccgac
ctgcgccagcgcctggagcgcctcgccaccggcacctcgccgctggcggacagccggggc
cttggcagcggggtgcactgggtgcgccccacgctgctggccgaggtctcgttcgcgcag
tggaccgaggacggccaggtccgccatgccgtattccacggcctgcgtgcggacaagcct
gcacgcagcattgtcaaagaggagccacagcacgtgccatcgaccgcatcttccgccagc
gctgcagccatgcctggcgctgcacgaccgaaaacccgcaatgccagggcggcacgactg
cccgcctcgatgaccatcacccatcccgagcgggtcatcgatccctccaccggcatcacc
aagatggatctggcgcgctactacgccacggtggcgcccttcatgatcacccacctcaag
tcccggcccgtggccatggtgcgggcgccggacggcatcgagggcgagctgttcttccaa
aagcacctcgaccaggcgccgctgcagggcatcgccgccctgtcgccggaactggacccc
ggccatgccccgctgatggaggtgtcccggcgcgaaggcctggtggcggcggcgcagatg
aacaccatcgaatggcacacctggaacgcgcgcaaggaccgcatcgaccggcccgaccgc
atgaccttcgacctggaccccggcgaaggtgtgccctggcagcaggtgcaggaggccgcc
agcctgctgcatgtgctgctgcaggagctggagctgccggccttcctcaagaccagcggc
ggcaagggcctgcacgtggtcgtgcccatcaagcggctgctggactgggacaccgtcaag
gccttctcgcaggccgtggtccagcacctggcccatgctgtgccccagcgcttcgtggcc
aaaagcgggccgcgcaaccgcgtgggaaagatttttgtggactacctgcgcaacggcttc
ggcgccaccacggcctgcgcgtggacggcccgggcgcggccgggcatgggcatctccgtg
cccgtggcctggaacgagctggacaggctcacgggcggcgcgcactggaccattcgctcg
gtagaccagcgcctgcgcctgggcaactccccttgggagcactacggcacggccgccgtg
ggcctgggccgcgccatgaaggcgctgggcttcgaggcgcagcgttga
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