Desulfuromonas sp. AOP6: AOP6_2324
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Entry
AOP6_2324 CDS
T08366
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dep
Desulfuromonas sp. AOP6
Pathway
dep03030
DNA replication
dep03410
Base excision repair
dep03420
Nucleotide excision repair
dep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AOP6_2324 (ligA)
03410 Base excision repair
AOP6_2324 (ligA)
03420 Nucleotide excision repair
AOP6_2324 (ligA)
03430 Mismatch repair
AOP6_2324 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dep03032
]
AOP6_2324 (ligA)
03400 DNA repair and recombination proteins [BR:
dep03400
]
AOP6_2324 (ligA)
Enzymes [BR:
dep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AOP6_2324 (ligA)
DNA replication proteins [BR:
dep03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AOP6_2324 (ligA)
DNA repair and recombination proteins [BR:
dep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AOP6_2324 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AOP6_2324 (ligA)
MMR (mismatch excision repair)
DNA ligase
AOP6_2324 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AOP6_2324 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
BCA80537
LinkDB
All DBs
Position
2498452..2500467
Genome browser
AA seq
671 aa
AA seq
DB search
MTPDQARKRHEELCGTLHRHNYLYHVLDQPEISDADYDRLFRELLDLEAQFPELVHPESP
SQRVGAPPLEKFEQVRHSLPMLSLENAFTEEDMRQFDGRIRRFLATEQPLEYVCEMKMDG
VAVELVYEEGRLKVGSTRGDGTTGEKITENLKTIPSVPLVLTPPYPALLEVRGEVYMELD
NFQALNREREEEGLPTFANPRNATAGSLRQLDSAVTARRPLQIFCYGIGRLEGEAPPTHE
QLLQQLQQWGLRTNLDGTTCCPDIEAVITQYQSLQQGREDLPYEIDGMVVKVNELALQRE
LGEKTRTPRWAIAWKFPPRQAVTILEDIQLQVGRTGAITPVAHLQPVEVSGVTVSRASLH
NWDEIDRLDARIGDQVVVERAGDVIPDVVRVLTEKRTGKETRIPMPTHCPVCGSPVKRLE
DEVVPRCQGLSCPAQLKESLKHFARRGGMDIDGLGGKYIDQLLQLGLVRNVADLYRLSKE
DLFRFERMGDKLAEKLLDAIEASKKRPLSRFLNALGIRHVGDHMAKVLASQFGSLDELSR
ASQEDLLAIHEIGPQVASSVTSFFASPQNQQILADLATLGVRPEREERRAGGPFSGKTFV
FTGTLALFSRKEAQTLVEKLGGRASGSVSKKTDFVVAGEEAGSKLTRAQELGVTILSEEE
FEQLVKKEGVS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgaccccagaccaggcccgaaaaagacatgaggagctgtgcggcacgctccatcggcac
aactatctctatcacgtgctggatcagccggaaatctccgacgcggattatgaccgactg
ttcagggaactgctcgaccttgaagcgcaattccccgagcttgtccatccggaatcccca
agccagcgcgtgggagcgcctccgctggagaagtttgaacaggtccgccactccctgccc
atgctctccctggagaatgccttcaccgaggaggatatgcgtcagttcgacggtcgcatc
cggcgctttctggccacggaacagccgctggaatatgtctgcgaaatgaagatggacggg
gtggcggtcgaactcgtctacgaagagggacgcctgaaggtgggttcaacccgcggcgat
ggcacgaccggtgagaagatcaccgagaacctcaaaacgatcccttccgtccccctcgtt
ctgactcccccctaccctgcgctgctcgaagtacggggagaagtctatatggagctggac
aacttccaggctctcaatcgggagagggaggaagaggggctgcccactttcgccaatccg
cgcaacgccaccgccggcagccttcgtcagcttgattcggcggtcaccgcccgccgtcca
ctgcagatattctgctacggcatcggccgcctggagggagaggccccacccacccacgag
cagcttctgcagcagctgcaacagtggggtttgcgcaccaacctcgacggtacaacctgt
tgcccagacattgaggcggttatcacccaataccagtcgcttcaacagggtcgggaagat
cttccttacgaaatcgacggcatggtcgtcaaagtcaacgaactggccctgcagcgggaa
ctgggcgaaaaaacccgcacaccgcgctgggccattgcttggaaattcccgccccgccaa
gcggtcaccattctggaggacatccagcttcaggtcggccgcaccggcgccattaccccc
gttgcccatctgcagccggtagaagtcagcggcgtcaccgtctctcgcgccagcctccac
aactgggacgaaatcgaccgccttgatgcgcgtatcggcgaccaggtggtcgtggagaga
gccggcgatgtcattcccgatgtcgtcagggtacttaccgaaaaacgcacgggaaaagag
acccgtattcccatgcccacccattgccccgtctgcggttcaccggtaaagcgcctggag
gatgaagtcgtccctcgctgccaggggctttcctgcccggcgcagctcaaggagtctctc
aaacactttgcccgccggggaggcatggacattgacgggctggggggaaaatatatcgac
cagttgcttcagctcggactggtaaggaacgtggccgatctctatcgcctgagcaaggaa
gacctcttccggtttgagcgcatgggcgacaaactggccgagaaactcctggatgccatc
gaggccagcaaaaaacgtcccctctcccgcttcctcaatgctttgggcattcgacacgtc
ggtgaccatatggccaaagtgcttgccagccagttcggctccctggatgaactgtcccgg
gcaagccaggaggatctgctggccattcacgaaatcggcccccaggtggccagcagcgtc
accagctttttcgcgtccccccagaatcagcagattctggctgacctggcgacgctcggc
gtgcgccccgaacgcgaagaacgccgggccggcggccccttcagcggcaagacttttgtc
tttaccggcacactggctttgttctcacgcaaagaagcacagacgctggtggaaaagctc
ggtggccgcgccagtggctcggtcagcaagaaaacggacttcgtcgttgcgggcgaggaa
gcaggcagcaagctgacgcgggcccaggagctgggggtgaccatcctcagcgaagaagag
tttgaacagctggtgaaaaaggagggagtatcgtga
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