Devosia sp. H5989: XM25_14700
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Entry
XM25_14700 CDS
T04003
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
deq
Devosia sp. H5989
Pathway
deq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
deq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
XM25_14700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
deq03400
]
XM25_14700
Enzymes [BR:
deq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
XM25_14700
DNA repair and recombination proteins [BR:
deq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
XM25_14700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
DNA_ligase_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AKR57018
LinkDB
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Position
complement(3010502..3013075)
Genome browser
AA seq
857 aa
AA seq
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MAARAAQTLLKDYQAKRDFARTREPSGKQAGRTGKGKAGIFVVQQHDATRMHWDFRLELD
GVLKSWAVTRGPSNNPSDKRLAVRVEDHPLDYAHFEGTIPEGEYGGGTVMLWDEGTWEPL
GDPHKGLEEGDLKFRLNGQRMKGEWVLVHMKGRDRGGKENWLLIKHRDEYASDDGEALVE
DNTTSVETGRNLEGIAKGLKSRKAPAKPKVWTHGKEVSLPDFRPPELATLVDAVPQGSGW
IFEMKYDGYRCLAAIAGEEVRLYTRNGNDWTTQFGAIREPLAGLTKGSALIDGELCAFDR
EGHTDFSTLKNALSTGAPLVYFVFDLLEEDGEDLTRLPLLERKERLAKLLGKVDKTSPVQ
FSDHIEGNGQKVLDTLCAAGHEGVIAKRADSHYLGERTKAWLKVKCLKRQEFVIGGWRPS
DKKRTFASLLLGAWENDRLVYHGRVGTGFSDKEAAALQKALDERARKQTPFANAPRDISR
VARWVEPDLVAEIAYSEVTPDGALRHPSFIGLREDKPARSVKMEVASAPPAEAASSKGKG
ARVQHLDPAKGVAAAERLGIRLTSPDRIAYPGQGVTKGELVAYYDAVADAMLPYIKDRPL
SLVRCPQGRAKACFFQKHDTGGFPAAMKTVEIAEKDGSKESYFYVSDLSGIVAAVQMNTL
EFHLWGSRRDKIELPERIIFDIDPDEGLGFEHVRAAAIDIRKGLESWGLESFAMLTGGKG
IHVIAPIARRTEWPEVKLFCKTFAQTMAEAEPERFTATLSKEKRQGKMFIDYLRNERGAT
AISPYSTRSREGAPVATPVTWAELETIERANAFSLAQAAERAAGPNPWPDYFKLEQAITN
AMVNAVAGPVRKSAPKR
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggccgcccgcgctgcccagacgctgctcaaggactaccaggccaagcgcgacttcgcc
cggacgcgcgaaccctccggcaagcaggccggcaggaccggcaaggggaaggccggcatc
ttcgttgtccagcagcatgacgccacccgcatgcattgggacttccggctcgagctggat
ggcgtgctcaagagctgggcggtgacgcgcggcccatcgaacaacccttcggacaagcgg
ctcgccgtgcgggtcgaggatcacccgctcgactacgcccatttcgagggcacgattccg
gagggcgaatatggcgggggcaccgtcatgctctgggacgagggcacctgggagccgctg
ggggatccccacaaggggctcgaggagggcgacctcaagttccgcctcaacgggcagcgc
atgaagggcgaatgggtgctcgtccacatgaaggggcgcgatcgcggcggcaaggagaac
tggctgctcatcaagcaccgggacgaatatgcgagcgatgacggggaggcactggtcgaa
gacaacaccacgagcgtcgaaacgggccggaacctggaggggatcgccaagggtctcaag
tccaggaaggcgcccgccaagcccaaggtctggacgcatggcaaggaagtaagtcttccc
gatttccgcccgcccgagttggcgacgctcgtcgatgccgtgccccagggctcgggctgg
atcttcgagatgaaatacgacggctaccggtgcctggcggctatcgcaggcgaagaggtt
cggctctacacccgaaacgggaacgactggaccacccagttcggtgcgatccgcgagccg
ctcgccggcttgacgaagggcagcgccctcatcgacggagaattgtgcgccttcgaccgc
gagggccataccgatttttcgacgctcaagaacgcgctttcgacgggtgcgccgctggtc
tatttcgttttcgaccttctcgaagaggacggcgaggacctgacgcggctgcccctgctc
gagcgcaaggagcggctggccaagctcctggggaaggtcgacaagacctccccggtccag
ttttcggatcatatcgagggcaatgggcaaaaggtgctcgatacgctatgcgcggcgggc
cacgagggcgtcatcgccaagcgcgcggactcacactacctgggcgagcggaccaaggcc
tggctcaaggtcaaatgcctcaagcgccaggaattcgtcatcggcggctggcggccatcg
gacaagaagcgcaccttcgcctcgctgctcctgggagcctgggagaatgacaggctcgtc
tatcacggccgcgtcggcaccggcttttccgacaaggaagcggccgccctccagaaagcg
ctcgatgagcgggcacgcaagcagacgcccttcgctaacgccccgcgcgacatctcgcgg
gtagcgcgctgggtcgagccggacctggtggccgagatcgcctatagcgaggtcacgccc
gatggagcgctgcgccatccctccttcatcggcctgcgggaagacaagccggcgcgctct
gttaagatggaagtggccagtgcgccgccggcagaggcggcgtcgtcaaagggcaaagga
gcgcgcgtgcagcacctcgatccggcaaagggcgtggcggcggcggagcgccttggcatc
cggctgaccagcccagatcgcatcgcctatccggggcagggcgtcaccaagggcgaactc
gttgcctattacgatgcggtcgcagacgccatgctgccctacatcaaggatcgtccgctc
agcctggtgcgctgcccgcaagggcgcgccaaggcctgcttctttcaaaagcacgatacc
ggcgggttccctgcggcgatgaagaccgtcgagatcgccgagaaggatggctctaaggaa
agctatttctacgtctcggatctctccggcatcgtcgcggccgtccagatgaacacgctc
gaattccacctttggggttcgcgccgcgacaagatcgaactgcccgagcgcatcatcttc
gatatcgatccggatgaaggcctggggttcgagcacgtccgcgccgccgccatcgacatc
cgcaagggcctggaaagctggggcttggaaagttttgccatgctgacgggcgggaagggc
atccatgtcatcgcgcccatcgcgcgccgcaccgagtggccggaggtcaagctcttctgc
aagaccttcgcccagacgatggccgaggcggaaccggaaaggttcaccgccacgctttcc
aaggagaagcgccagggcaagatgttcatcgactatctgcgcaacgaacgcggcgcgacg
gcgatctcgccctattccactcgctcgcgtgaaggcgctcccgtcgcaacgccggtgacg
tgggcggaactggaaaccatcgagcgcgccaatgccttctcgctcgcccaagcggcggaa
cgggcagcggggcccaacccttggcccgactatttcaagttggaacaggccatcaccaac
gcgatggtcaatgcggtggccggcccagtccgcaagagcgctccgaagcgttag
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