Dehalogenimonas sp. WBC-2: DGWBC_0734
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Entry
DGWBC_0734 CDS
T03938
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dew
Dehalogenimonas sp. WBC-2
Pathway
dew03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DGWBC_0734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dew03400
]
DGWBC_0734
Enzymes [BR:
dew01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DGWBC_0734
DNA repair and recombination proteins [BR:
dew03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DGWBC_0734
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AKG53409
UniProt:
A0A0F7GDW9
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All DBs
Position
complement(695945..696958)
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AA seq
337 aa
AA seq
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MDRADMFDLAHLTGARKAPMPGRLPPMLATLTEKPFNDPDWYFEPKLDGYRLIASVNSGQ
VRLQSRNFHDYTVQFPAVAAEMATQPVDMALFDGEIVALDEQGRPCFQCLQHHIKKNPGN
SGGVMLKYYVFDLLYLNGYDLTEVPQSSRVKCLDKTIKTGSTVKAVRRFEGDGQEIFSAS
VKSGFEGIIAKNKHATYRPGKRSADWLKIKAVLTDEFVIIGYTPGQGTRDGSFGALVLAQ
YDLNGHLVYSGNVGTGFDEALLNDLMIQLEELTTKKAPSNLQLPLPSAITWVKPELVAEI
KFAERTQGGLLRAPVFLRLREDKEAPEVKTPVVEAKL
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggacagggcagatatgtttgatcttgcccacttgaccggtgcccggaaagctccgatg
ccggggcgtctgccgcctatgttagccaccctgaccgaaaagccgttcaatgaccctgat
tggtattttgaacccaagctcgacggttatcgcctgatagcatcagtcaactccgggcaa
gtaagattacaatcgcgcaattttcatgattataccgtccaatttcccgccgttgccgca
gaaatggcaacccaaccggtagatatggctctttttgatggtgaaatagttgcgctggat
gaacaaggccggccttgtttccagtgtctacagcatcatattaaaaagaatccggggaat
tcgggcggcgtaatgctgaagtactacgttttcgaccttctgtacctgaatggttacgat
cttactgaggtgccacaatcctcccgggtcaagtgtcttgataagaccataaaaactggc
agtacggtaaaggcggtacggcgatttgagggcgacggtcaggaaatattttctgcctca
gtaaaaagcgggtttgagggtataatagcaaaaaataaacatgcaacctaccgccctggg
aagcgttcagcagactggctgaaaataaaagctgtgttgaccgatgaatttgtcatcatc
ggttatacaccagggcagggtacccgcgacggcagtttcggcgcgcttgtacttgcccaa
tatgatctgaatggacatctggtttattccgggaatgtcggtaccggctttgatgaagcc
cttctcaatgatctgatgattcaattggaagaactgacaaccaaaaaagctccatctaac
ttacagctaccgctcccgtctgctatcacctgggttaaacccgagcttgtagccgagata
aaatttgctgaacgcacacaaggcgggttattacgggcgccggtattcctaagattgcgg
gaggataaggaagcgccggaagttaagaccccggtggttgaagcgaagctatag
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