Cavenderia fasciculata (cellular slime mold): DFA_07246
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Entry
DFA_07246 CDS
T02668
Symbol
lig1
Name
(RefSeq) DNA ligase I
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03030
DNA replication
dfa03410
Base excision repair
dfa03420
Nucleotide excision repair
dfa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DFA_07246 (lig1)
03410 Base excision repair
DFA_07246 (lig1)
03420 Nucleotide excision repair
DFA_07246 (lig1)
03430 Mismatch repair
DFA_07246 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dfa03032
]
DFA_07246 (lig1)
03400 DNA repair and recombination proteins [BR:
dfa03400
]
DFA_07246 (lig1)
Enzymes [BR:
dfa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DFA_07246 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
DFA_07246 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
DFA_07246 (lig1)
DNA replication proteins [BR:
dfa03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
DFA_07246 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
DFA_07246 (lig1)
DNA repair and recombination proteins [BR:
dfa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DFA_07246 (lig1)
NER (nucleotide excision repair)
Other NER factors
DFA_07246 (lig1)
MMR (mismatch excision repair)
Other MMR factors
DFA_07246 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-GeneID:
14872463
NCBI-ProteinID:
XP_004367109
UniProt:
F4PVW2
LinkDB
All DBs
Position
Unknown
AA seq
929 aa
AA seq
DB search
MQSSMLSFLTKKTDSTSASQTSPKKQQQTSTTSKDDDKKKSSTTNNNNDKSSKLKRKNRD
DEQVEEEEEEDNDIFDLSDDDHKVASQVSSSSSSNFEEKSISPPTPTPTKPKKAAPKKPA
KSTTKKTKKMEEDPKKNNNNNNSTIPAVGTNNNNTMSDSQESSASSTPIKSTSPIKQTTS
PTKKDNLIPTVTVLPTKKNLETTTSTTSTTSTTTTKSNDENEILEEEEELEEEEDEEEVI
EEEFEEEEENEKGETVVLKKKIFVKKPVKQKSTAKQLEQELTNLSKYHPITDAQWKKGLP
VPYMALAKTFELIEGTSRRLLIIEHLTNLFRSIMALTPGDLINTIYMSINKIGPSYGGKE
LGIGESILMKAVAESTGRTMEFIKQELKTVGDLGIIAQSSRMTQTMMFAPPPLTIQGVFK
IFSQIADMTGNSSQNKKKDLITKLLVSCKESEALYIIRSLQGKLRIGLAERSVLIALTRA
MVISPPALIASEPNGKLDTRKGKTTEEFASVIDAAVAKVTRAYSQLPNYDLLVPRLIVAD
GVDTILETCRLMAGIPVKPMLAQPTTGITQVLDRFQEMEFTCEFKYDGERAQIHLTEDGK
ISIYTRNLEDYTGKYPDIIANVKRFIGEGVTSFILDCEAVAYDPTNNKILSFQILSSRPR
KGVSLDQIKIPVCVFAFDLLYLNGKSLIDEPFYKRREVLYANFKETPGALTYAKHANISD
VNDIQLYLQEAIDGNCEGLMVKTLKEQSIYEPSKRSYNWLKIKKDYMAGMTDSVDVVPIG
AWYGKGKRTGVYGAYLLACYDDDNEDFQTLCKIGTGFSDEQLKEFTEILAPQVTNSCKNT
YIVSDNLKPDVWFNPSQVWEVLAADLSISPIHTAAVGVLDPNKGIALRFPRFIQIRKDKN
PEDATTASQIVDMYKNQKINSFKMVDEDY
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagctcaatgttatcattcttgacaaagaagactgattctacatcagcttcacaa
acttcaccaaagaaacaacaacaaacgagtacgacaagtaaagatgatgataagaagaaa
tcatcaacaaccaataataataatgataagagtagtaaactaaaaagaaagaatagggat
gatgaacaagtagaagaagaggaagaggaagacaatgatatctttgatttgagtgatgac
gatcataaagttgcaagccaagtctcttcttcctcttcttcaaatttcgaggaaaagtcg
atttcaccaccaactccaacaccaaccaaaccaaagaaagctgctcctaaaaagcctgca
aaatcaacaacaaagaagactaaaaagatggaagaagatccaaagaaaaataataataat
aataattccactattcctgctgtcggcactaataataataatacaatgagtgattcacaa
gaatcatctgcttcatcaacaccaattaaatcaacctcaccaattaaacaaacaacttca
ccaaccaagaaagacaacttaattccaactgttacagttttaccaaccaaaaaaaatctg
gaaaccactacttcaacaacttcaactacctctacaacaacaacaaaatcaaacgatgaa
aatgaaattttagaagaagaagaagaattagaggaagaagaggatgaggaagaagtaatt
gaagaagaatttgaagaagaagaagagaatgaaaaaggtgaaactgtagttttaaaaaag
aaaatatttgtaaagaaaccagtcaaacaaaaatcaactgccaaacaattggaacaagaa
ttaactaatctttcaaaatatcatccaatcactgatgcacaatggaaaaagggattacca
gtaccatatatggcattagcaaaaacctttgaattaattgaaggaacatcacgtagactt
ttaatcattgaacatttaaccaatttatttagatcgattatggcattgacaccaggtgat
ttgatcaataccatttatatgtcaatcaacaagattggtccatcgtatggtggcaaggag
ttgggcattggagaatcgattttgatgaaggccgtcgctgaaagtacaggtcgtacaatg
gaatttatcaaacaggagttaaagacggttggtgatttgggtatcattgcgcaatcgagt
agaatgacccagacaatgatgtttgcaccaccaccactcaccatccaaggtgtattcaag
atattctcgcagattgccgacatgactggcaactcttcacaaaacaaaaaaaaggatctt
ataacaaagttgttggtcagttgcaaagagagtgaagcactctacattatccgttcgttg
cagggtaaactacgtattgggttggcagagcgatcagtgttgattgcgttgactcgtgcc
atggtcatctcgccacctgcactcattgcatcggaacccaatggcaagttggacactaga
aagggtaagactaccgaggagtttgcaagtgtgatagacgcggctgttgccaaggtcaca
cgtgcgtacagtcagttacccaattatgacctgctcgtacctcgattgatagtggccgat
ggtgttgacacgatcctcgagacgtgtcggttgatggctggtatccccgtcaagccaatg
ttggcacagccaacaaccggtatcacccaagtattggaccgattccaagagatggagttt
acctgcgagttcaagtatgatggtgaacgcgcacaaatccatctcaccgaagacggtaaa
atcagcatctacacacgtaacctcgaagactatactggcaagtaccccgatatcatcgcc
aacgtcaagcgattcattggagagggtgtcacctcttttatcctggattgcgaggctgtt
gcgtacgaccctaccaacaacaagattctctcgttccaaatcctctcttcgagacctcga
aagggtgtttcgttggatcaaattaagattccagtctgtgtatttgcctttgacttgctc
tacctcaacggaaagagtttgattgacgagccattctacaagcgtcgtgaagtgctctat
gccaactttaaagagacgcccggtgccctcacctacgccaaacacgccaacatctcagat
gtcaacgatatccagctgtacttgcaagaagccatcgacggcaactgcgaaggtttgatg
gtcaaaactctcaaggagcagtccatctatgaaccatccaagcgttcgtacaactggctc
aagatcaaaaaggattacatggcaggcatgacagactcggtcgacgttgttcccattggt
gcatggtacggaaagggtaagcgtactggtgtctatggtgcctatttattggcatgctat
gacgatgacaatgaagatttccaaactctttgcaagattggtactgggtttagtgatgaa
caactgaaagaatttactgagatcctcgcaccacaagtcaccaatagttgtaaaaacacc
tatatcgtatctgacaatttaaaaccagatgtttggttcaatccatctcaggtctgggaa
gtattggccgccgatctctccatctctcccattcacactgctgccgtcggtgtgttggat
cccaacaagggcatagctcttcgtttcccaagatttattcaaattcgtaaagataagaat
ccagaagatgcaaccaccgcctctcaaatcgttgatatgtataaaaatcaaaaaatcaat
agttttaaaatggttgatgaagattattaa
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