Dyadobacter fermentans: Dfer_0365
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Entry
Dfer_0365 CDS
T00970
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dfe
Dyadobacter fermentans
Pathway
dfe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Dfer_0365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dfe03400
]
Dfer_0365
Enzymes [BR:
dfe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Dfer_0365
DNA repair and recombination proteins [BR:
dfe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Dfer_0365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
DNA_primase_S
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
ACT91634
UniProt:
C6VYF5
LinkDB
All DBs
Position
complement(417793..420501)
Genome browser
AA seq
902 aa
AA seq
DB search
MTLSKYNEKRKFDKTPEPKGGKGDNDELIFVIQKHDATRLHYDFRLEMEGVLKSWAVPKG
PSTDPSVKRLAMMVEDHPYDYKDFEGIIPKGNYGAGTVMVWDFGTYEPLEEVNGKLKAVK
GKKAREKLALKELHSGSLKVRLNGKKVKGEYALVKTKGMEENAWLLIKHRDKYASEDDIT
EKDRSAVSRRTLAGIEKAGDAIWESNHEEKKSTKGKTKAAKTEAKDPAEEAATEKKSPDE
DIAAILKKGKKQKFPDDLQPMLATLVDGPFDDPGWEYEVKWDGYRALAYLNNGEVKLQSR
NRKSFSDKFYPIYQQLQEWKINAVIDGEIVVINDKGLSDFNALQNWRSEADGELVYYAFD
IVWLEGKSLIHLPLSERKAILKSIVDENSPVQLGYSVEADGTAFFEAAQKMGLEGIMAKK
SDSEYYPGLRTRDWLKIKINKRQEVIIAGYTLNEGSSKLFSALLLAAYADGELQYVGKVG
TGFKEKQQKEMMALFKPLIAKKSPFKETPDYNKPSRFRPNPPHANATWLKPELVCEISFT
EITADGVFRHPSFEGMREDKSAKEVVREVEKPAEEIVDDANEQSETIIRKPGRAKRKTLL
NPKEETQVRKISGHEVKFSNLGKLYWPDDKIQKRELINYYYQVAPLILPYLENRPLSLNR
FPNGIRGKSFYQKDVTGKVPEWIETTPYVSEGENKNFMLCNDEATLLYMANLGAIDVNPW
NSRIETPDNPDWCLLDLDPDTTNTFEQVIETAQAIKNLLDSLGVPSYCKTSGSTGLHIYI
PLGAKYSYDQCQLFAEWVAGQVQQQLPDFTSVERLTKNRKGKLYIDYLQNRPKATLAAPY
SVRPKPGATVSMPLHWEEVKVGLQLKDFTIYNAMDRIQREGDLFKPVLGEGIDLEEVIAK
MG
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atgacactttccaagtacaacgaaaaacgcaaattcgacaaaacgcctgagccgaagggc
ggcaagggcgataacgacgagcttatttttgtgatccagaaacacgatgccacgcgcctg
cattatgatttcaggctggaaatggaaggcgtgctcaaaagctgggcggtcccgaaaggt
ccttccacggacccgtcggtgaaacgtctggcgatgatggtggaagaccatccgtacgat
tacaaggatttcgagggcattatccccaagggaaactatggcgcggggacggttatggtg
tgggatttcggcacgtatgagcccttggaagaagtaaatggaaaattgaaagctgttaaa
ggcaaaaaagcccgggaaaaactggcgctgaaagagctgcattcgggctcgctgaaagtg
cggctgaatggcaagaaagtgaaaggcgaatatgcattggtgaaaacgaaaggcatggag
gagaacgcgtggctgctgatcaagcaccgcgacaaatacgcatctgaggacgacattacc
gagaaagaccgctcggccgtttcccgacgcacgctcgccggcatcgaaaaggccggtgac
gccatttgggaaagcaatcacgaagaaaagaaatcaaccaaaggcaaaacgaaagccgct
aaaaccgaagcgaaagatcctgccgaagaagccgccactgaaaaaaaaagtccggacgag
gacatagcagccattctgaaaaagggcaaaaagcaaaagtttccggatgacctgcaaccg
atgctcgctacgctggtagacgggccgttcgacgatcccgggtgggaatatgaggtaaaa
tgggatggataccgggcattggcctatctcaacaatggggaggtaaagctgcaatcgcgg
aacaggaaatcgttcagcgacaaattttatcctatttaccagcaattgcaggaatggaaa
atcaatgcggtgatcgacggcgaaattgtggtgatcaacgacaaaggcctttcggatttc
aatgcgctgcaaaactggcgcagcgaggccgacggcgaactggtgtattacgctttcgac
attgtgtggctcgaaggcaagagccttatccatttgccgctgagcgaacgaaaagctatt
ttgaaaagcattgtggatgaaaacagtccggtacagctcggttacagcgtcgaagcggac
ggtactgcgttttttgaagcagcgcagaagatgggcttggagggcattatggccaaaaaa
tccgacagcgaatattaccccggcctccgcacgcgcgactggctaaaaatcaagatcaac
aaacggcaggaggtgatcatcgccggttacaccctgaacgaaggctcatccaagctgttc
agcgcgctgctgctggctgcctatgccgatggcgagctgcaatatgtgggcaaagtaggc
acgggtttcaaggaaaaacagcaaaaggagatgatggcgctcttcaagccgctgatcgcc
aagaaaagtcctttcaaagaaacccccgattacaacaagccctcgcgcttccgtcctaac
ccgccccacgcgaatgcgacctggttgaaaccggagctggtgtgcgagatcagctttacg
gaaattacggccgacggcgtgttcaggcatccgtcgtttgagggaatgcgcgaggataaa
tcggcgaaggaagtggtgcgggaggtggaaaaaccagcggaggaaatcgtggacgacgcg
aatgagcagagcgagaccatcatccggaaaccgggcagagcgaaacggaagacgcttttg
aaccctaaggaagaaacgcaggtgcgcaaaatcagcggacatgaggtgaaattctcaaat
ctgggaaaactctactggcccgacgacaagatccagaagcgtgagctgattaactattac
taccaggttgcgccgctgattctgccctacctcgaaaaccgcccgctctcgctcaaccgc
ttcccgaacggcattaggggcaagagtttttaccaaaaagatgtgacgggcaaagtgccg
gaatggatcgaaacgacgccctatgtttcggagggtgagaacaaaaacttcatgctctgc
aacgacgaggccactttgctttatatggctaacctgggggcgattgacgtgaacccctgg
aacagccgcattgaaacgcccgacaatcccgactggtgcctgctcgacctcgaccctgac
acgaccaacactttcgaacaagtgatagaaaccgcgcaggccattaaaaacctcctggat
tcgcttggcgtaccatcttattgcaaaacctccggctccaccggcttgcacatttacatc
ccgctgggcgcgaaatacagctacgaccaatgccagctcttcgccgaatgggtagctggc
caggtgcagcagcagctccccgatttcacgagtgtggagcgcctgaccaagaaccgcaag
ggcaagctttacatcgattacctccaaaatcgccccaaggcgacattggccgccccctat
tccgtacgcccgaaacccggcgcgacggtgtcgatgcccttgcattgggaggaggtgaaa
gtgggcctgcaactgaaagatttcacgatttacaatgccatggaccgcattcaacgggaa
ggcgaccttttcaaaccggtgttgggtgaagggatcgacctggaagaggtgattgctaaa
atgggctga
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