Dyadobacter fermentans: Dfer_4988
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Entry
Dfer_4988 CDS
T00970
Name
(GenBank) alanine racemase
KO
K01798
Alr-MurF fusion protein [EC:
5.1.1.1
6.3.2.10
]
Organism
dfe
Dyadobacter fermentans
Pathway
dfe00300
Lysine biosynthesis
dfe00470
D-Amino acid metabolism
dfe00550
Peptidoglycan biosynthesis
dfe01100
Metabolic pathways
dfe01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
dfe00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Dfer_4988
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Dfer_4988
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Dfer_4988
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
Dfer_4988
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
dfe01011
]
Dfer_4988
Enzymes [BR:
dfe01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.1 alanine racemase
Dfer_4988
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.10 UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase
Dfer_4988
Peptidoglycan biosynthesis and degradation proteins [BR:
dfe01011
]
Precursor biosynthesis
Amino acid ligase
Dfer_4988
Racemase
Dfer_4988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ala_racemase_N
Ala_racemase_C
Mur_ligase_M
Mur_ligase
Mur_ligase_C
Motif
Other DBs
NCBI-ProteinID:
ACT96188
UniProt:
C6W7J4
LinkDB
All DBs
Position
complement(6038060..6040534)
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AA seq
824 aa
AA seq
DB search
MSLTVNTSPIVTTQAQYILTDSRQVSFPGQSIFFAIKGERHDGHRFLPELYAAGVREFVV
EEAAFTGALRETAATWDDAQIWVVSSSIRALQQLVASKRKQFDIPVVGIAGSNGKTIVKE
WLVQLLSPGRSIVASPKSYNSQIGVPLSVWNLSKEHSLAIFEAGISKAHEMEYLQPVMQP
TIGIFTNIGPAHDDGFRSRKQKITEKLRLFTKVKKLIYRKDYHEIDEEISLILKPVNAFL
ETLSWGSNYSGSHVQVTFNPQKDKTVISLTGKLGNHTFETGFRDDASLENLTHCIVFLLD
FGLEPAVIQERVLLLKPVSMRLELKEGINHSYIIDDAYNNDLQGLAMALNFLAQQEQRNR
KTVILSDVLQTGQTPTELYKMVSRLLSEKSIDRLIGIGKQISSQASLFDIAEQEFYDDTD
SFLKTFAFPTLADTLVLVKGARPFSFEKIVHRIQQKAHDTVLEINLDALVHNLNYYRARA
GQGTKIMAMVKAFAYGSGSSEVAALLQYHRVDYLGVAYTDEGVMLRQSGITLPIMVMNAT
LPTFDLLWQYKLEPEIYSRRILTDWIEYITRKGEPTNTPSVHLKLDTGMHRLGFVKDDYE
WLVEQLRQNPALKVATLFSHLVGADEGVHNEFSRKQYAQFMEGAELIEATLGYKTIKHIL
NSAGIVRFPEYRLDMVRLGIGLYGVEATGQDQRALQSVGTLKTIVSQVKYLSSGETVGYS
RKGVVDHDSAIATLAIGYADGYDRGLGNGVGKVWVNGTLCPTIGNICMDMTMIDVTNAQV
EEGDEVIVFGKEVPITELAKTINTIPYEILTGIGDRVKRVFFKE
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgagtcttactgtcaatacatcccccattgtaaccacacaagcccagtacatcctgacc
gacagccgccaggtttcgtttcccggccagagtatcttttttgccattaaaggcgagcgc
cacgacggccaccgcttcctgcccgaactgtacgcggcgggcgtgcgggagtttgtcgta
gaagaagccgcattcacgggcgcgctgcgcgaaacagccgcgacgtgggacgacgcgcag
atctgggtggtttcgtcgagcatccgggcattgcagcaattggtggcttctaaaagaaag
caattcgacattccggtggtgggcattgcgggaagtaacggcaaaacgattgtgaaagaa
tggctcgtgcagctgctgtcgcccggccggagcattgtggcgagtcccaaaagctacaat
tcgcagatcggcgtgccgctttcggtgtggaacctcagcaaagagcattcgctggcaata
tttgaggcgggtatttccaaagcacacgaaatggagtatttgcagccggtgatgcagcct
acaatcggtatctttaccaatatcggcccggctcacgacgacggtttccgaagccggaag
cagaaaattaccgagaaattgcgccttttcaccaaggttaaaaaactcatttacagaaaa
gattaccacgaaatcgacgaggagatcagcctgatactgaaaccggtgaatgcattcctc
gaaacgctgagctggggaagcaactactccggctcgcacgtgcaggtgactttcaatcct
caaaaagataaaaccgtgatttccctcaccggaaaactcggcaaccatacattcgaaacc
ggcttccgagacgacgcctcgctcgaaaacctcacgcattgcattgttttcctgctcgat
ttcggcctggaacccgccgtgatccaggaacgcgtgctgctgctcaaacccgtctccatg
cgtttggagctcaaagagggcattaaccactcctatatcatcgacgacgcctataacaac
gacttgcagggcctcgcgatggcgctcaacttcctcgcccagcaagagcagcgcaaccgc
aaaacggtgatcctctcggatgtgctccaaaccggacaaacgcccacggagctgtataaa
atggtttcccgcctgctgagtgaaaaaagcattgaccgcctcatcggtatcggaaaacaa
atcagcagccaggcatcgctgttcgatattgccgagcaggaattttacgacgataccgac
agttttctcaaaacattcgcctttcccacgcttgcggatacgctcgtgctcgtgaagggt
gcccggccgttttcgtttgaaaaaatcgtgcaccgcattcagcagaaagcgcacgacacg
gtgctggaaatcaacctggatgcattggtccacaacctgaattattatcgcgcgcgggct
ggtcagggtacaaagatcatggcgatggtgaaggcattcgcctatggcagcggcagctcc
gaggtggccgcattgctgcaataccaccgcgtggattacctgggcgtggcttacacggac
gagggtgtaatgctccgccaaagcggcattacgctgcccattatggtcatgaatgcaacc
ctgccgaccttcgacctgctgtggcagtacaaacttgaacctgaaatatatagccgccgc
atcctcaccgactggatcgagtacattaccaggaaaggcgagccgaccaacacgccttcc
gtgcatttgaaactcgatacgggaatgcaccgcctcggttttgtgaaggacgactacgaa
tggctggtagaacagctccgccagaatcccgcgctcaaagtagcgaccctattttcgcat
ttggtgggagccgatgaaggcgtgcataacgagttttcaaggaaacaatacgcgcaattc
atggagggcgccgagctgatcgaagcgactttgggatacaaaaccattaaacacatcctc
aactccgccggcatcgtccgcttccccgagtaccgcctcgatatggtgcggcttggcatt
ggcttgtatggcgtggaagcaaccggccaggatcagcgtgcattgcagtcggtaggtaca
ttgaaaaccattgtttcgcaagtgaaatacctctcgtcgggcgagacggtaggttacagc
cgcaagggcgtggtagaccacgactcggcgattgcgacgctggcaatcggttatgcggat
ggttacgaccgtggcctgggcaatggcgtgggtaaggtgtgggtgaatggcacattgtgc
cccacgatcggcaacatttgcatggatatgacgatgatcgacgtcaccaatgcgcaggta
gaagaaggggatgaagtgatcgttttcgggaaggaagttccgattacagaactagcgaaa
accatcaacaccatcccctacgagatcctgacaggcattggtgaccgtgtcaagcgtgta
ttttttaaagagtaa
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