Drosophila hydei: 111605338
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Entry
111605338 CDS
T05888
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
dhe
Drosophila hydei
Pathway
dhe03020
RNA polymerase
dhe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dhe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111605338
09124 Replication and repair
03420 Nucleotide excision repair
111605338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dhe03021
]
111605338
03400 DNA repair and recombination proteins [BR:
dhe03400
]
111605338
Enzymes [BR:
dhe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111605338
Transcription machinery [BR:
dhe03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111605338
DNA repair and recombination proteins [BR:
dhe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111605338
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
111605338
NCBI-ProteinID:
XP_023179583
UniProt:
A0A6J1MJG9
LinkDB
All DBs
Position
Unknown
AA seq
1889 aa
AA seq
DB search
MSTTTDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGV
IDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNP
KIKEIVMKSKGQPRKRLAYVYDLCKGKTICEGGEDMDMTKDNQQVDPNKKPGHGGCGHYQ
PSIRRTGLDLTAEWKHVNEDSQEKKIIVSAERVWEILKHITDEECFILGMDPKYARPDWM
IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQENIK
MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERID
LRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKM
TKRDVFITREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHST
HPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLELGHDIAGRF
YGNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPT
PGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPT
VKLSNKVFEKRFKFDWSNERYMRKVFTDDVIKEMTDSSDAIQELESEWDRLVSDRDNLRT
IFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIRGVKGLLERCVIVTGNDR
ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA
RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRIS
PWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENK
FQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITDTGEF
KAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQF
YGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAET
DPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSMLGGAAIFMGGGSTP
SMTPPMTPWVNCHTPRYFSPSGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHPGSSPSS
PRQSMSPYYHASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYAATSPRYA
STTPNFNPQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNMYSPGNAYSPSSSNY
SPNSPSYSPMSPSYSPSSPSYSPTSPCYSPTSPSYSPTSRNYTPVTPSYSPTSPNYSASP
HYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY
SPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSP
MYSPTAPSHYSPTSPAYSPSSPTFEESDD
NT seq
5670 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccacaacggattcgaaggcgccgctgcgccaggtgaagcgcgtacagtttgga
attttgtcacctgatgaaatccgtcgtatgtcggtgacagagggtggcgttcagttcgct
gagaccttggaaggtggtcgtccgaagctgggcggcttgatggatcctcgccaaggtgtg
attgaccggacgtcgcgttgtcagacgtgtgcgggaaatatgaccgaatgtccgggacat
tttggccacattgacctggccaagcccgtctttcacatcggtttcataacgaagacaatc
aaaatcttgcgctgcgtttgtttctactgctctaagatgttggtctccccacacaatccg
aagatcaaggagattgtcatgaaatcaaaaggtcagccacgcaaacgtttggcttacgtt
tacgatctgtgtaagggcaaaacgatttgcgagggcggtgaagacatggacatgactaaa
gacaaccagcaagtggatccaaacaagaaacccggtcacggtggctgcggtcactatcag
ccatcgatacgtcgtactggtctcgatttgacagccgaatggaagcacgtgaacgaggat
tcgcaggagaagaagatcattgtctccgctgagcgtgtctgggagatactcaaacatata
accgacgaggaatgctttattttgggaatggacccgaaatatgctcgaccagattggatg
attgtcaccgtgttgccagtgcctcctttggctgtacgtccggccgttgttatgttcggt
gcggccaagaatcaagatgatttgacacacaaattggctgacatcatcaaagccaacaat
gagctgcgcaagaatgaggcaagcggtgctgcggctcacgtcatacaggaaaatataaag
atgttgcaattccatgtggcaacgctggtcgacaatgatatgcccggcatgccgcgtgcg
atgcaaaagtcgggaaaaccgctgaaagcgattaaagcgcgtctaaagggcaaagaagga
cgtatccgtggtaatttgatgggaaaacgtgtcgatttctctgcacggacagtcatcaca
cccgatcccaatttgcgtatcgatcaagtcggagtgccacgttcgatagcacagaacttg
accttcccggagcttgtcactccattcaacatcgatcgcatgcaggagctagtgcgtcgt
ggtaattcccaatatccaggcgccaagtatattgtacgcgacaatggtgaacgtatcgat
ttgcgtttccatccgaaatcctcggatctccatttacagtgcggctacaaagtggagcga
catttgcgtgacgatgatttggtcattttcaaccgtcagccaactctgcacaagatgagt
atgatgggtcacagagtgaaggtgttgccttggtccacgttccgcatgaatctgtcctgt
acttcgccttacaatgctgatttcgatggggacgagatgaatctgcatgttccccaatcc
atggaaacacgtgctgaagtcgagaacatacacataacaccgcgacagattataacgccg
caggctaacaagcccgtcatgggcatcgtgcaggatacactcaccgcagtacgtaagatg
acgaaacgtgatgtgtttatcacgagagagcaggtgatgaatctgttaatgtttttgccc
acgtgggatggaaaaatgccgcagccatgcatcttaaagccacgtccgctgtggacaggc
aaacagatcttctcattgatcatacccggcaatgtgaacatgatacgcacgcattcaacc
catccggacgaggaggatgatggaccttacaaatggatatcacccggtgatacaaaggtc
atggtggagcatggtgatcttataatgggtatactctgcaagaaaactctcggcacctcg
gccggatctctattgcatatctgtttccttgaattgggtcacgatattgctggacgtttc
tatggcaacattcaaacggtgatcaataattggcttctgcttgagggtcacagcattggt
attggcgacaccattgccgatccgcagacctacaacgaaatccaaatggccatcaagaag
gcgaaagacgatgtcatcaacgtcatacaaaaggcccacaacatggagctggagccaacg
cctggtaatacgctgcgacagaccttcgagaacaaagtgaatcgcatattgaacgatgct
cgtgacaaaactggtggatcggccaagaaatctctcacggaatacaacaatctgaaggct
atggtggtgtccggctcaaagggttccaacattaacatctcacaggttattgcttgtgtg
ggccagcagaacgttgagggcaagcgtataccatacggttttcgcaagcgcacgttgccg
catttcatcaaggacgattatggtcctgagtccagaggctttgtggagaactcctatctg
gccggcttgacaccttccgagttctatttccatgccatgggcggcagagaaggtttgatt
gatacagctgtgaagactgctgaaactggttatatccagcgtcgtctcatcaaggctatg
gagtctgtaatggtcaactacgatggcacagtgcgtaattctgtcggacaactcattcag
ttgcgttatggcgaggacggcctttgtggcgaattggtcgaattccaaaatatgcccaca
gtgaagctttcgaataaggtctttgagaagcgcttcaaattcgattggtcaaacgaacgt
tatatgcgcaaggttttcacagacgatgtgatcaaagagatgacagatagcagcgatgcc
attcaagaactggaatccgaatgggatcgtctggtcagcgatcgcgacaatttacgcacc
atctttcctaatggcgattcaaaggtggttctgccatgcaatctgcagcgaatgatctgg
aatgtccagaagatctttcacatcaataaacgcctgcccacagatctgtcgccgatgcgt
gtgataagaggcgttaaaggattgctggaacgttgtgtaattgtcacgggcaacgatcgc
atctccaagcaagccaatgagaatgcaacgctactcttccagtgcctcatccgttcgacg
ttgtgcaccaaatacgtatccgaggagttccggttgtcgacagaggcattcgagtggttg
atcggtgagatcgagacccgcttccagcaggctcaagcgaatccgggtgaaatggttggc
gctttggccgctcagagtttgggtgagccggccacacagatgaccctgaatactttccat
ttcgctggtgtgtcctcgaagaacgtaactctgggtgtgcctcgtctcaaggagattatc
aacatatcgaagaagccaaaggcgccttcactcacagttttccttaccggcggcgctgct
cgcgatgctgaaaaggccaagaatgtgctctgtcgactagagcataccacattgcgtaag
gtaacagccaacacagctatttactatgatccagatccgcagcgtacggttattgcggag
gatcaggagttcgttaatgtgtactatgaaatgcccgactttgatccgacacgcatttcg
ccgtggttgctgcgcatcgaactcgatcgcaaacggatgacggataagaagctgactatg
gaacagattgccgagaagatcaatgttggtttcggcgaggatctcaattgcatcttcaac
gatgacaatgcggacaaattggtgctacgcattcgcatcatgaataacgaagagaacaag
ttccaggatgaagatgaggcagtcgataagatggaagacgatatgttcttgcgctgcatc
gaggcgaacatgttatctgacatgacactgcaaggcattgaggcgattggcaaggtctat
atgcatttgccccaaacggacagcaagaagcgaatcgttatcaccgatacgggtgaattc
aaagccattggcgaatggctcttggaaacggatggcacatcgatgatgaaggtgctatcg
gagcgtgatgtcgatcccatacgcacatcctccaatgatatttgcgaaatcttccaagtg
ctgggcattgaagctgtgagaaagtccgtggagaaggagatgaatgctgtgcttcagttt
tatggcctctacgtgaactatcgtcatttggctttgctttgcgatgtgatgacggccaag
ggacatttgatggccatcacgcgacacggtatcaatcgacaggacacgggcgcccttatg
cgttgctcctttgaggaaaccgtggacgtgttgatggatgcagcggcgcatgccgaaacc
gatcctatgcgtggtgtttccgagaatattataatgggtcaattacctaaaatgggcacc
ggctgctttgatttgttgctggatgcagagaaatgtcgcttcggcattgagattccaaat
tctttgggcagcagcatgctgggcggtgcagccatctttatgggtggtggctccacgcca
agtatgacgcctccaatgacgccatgggtgaattgccatactccacgttacttttcgcca
tccgggcatgtaagtgccatgacgcctggtggacccagtttttcgccatcggccgcttcg
gatgcctcgggcatgtcgcccagctggtcgccagcacatcctggttcttcgcctagttcg
ccgcgacaatcgatgtcgccgtattaccacgcttcgccaagcgtttcgccctcatactcg
cccacgtcgccgaattatacagcttcgtcgccgggcggcgcttcgccaaattattcgcca
tcgagccccaactattcgcccacatcgccgctttacgcggctacgagtccacgttatgcc
tcgaccacgcccaatttcaatccacaatcgactggatattcgccttcgtcgtcgggctat
tcgcccacatcgcctgtgtattcgcccacatcgaatttccagtcgagtccctcgtttgcg
ggcagcggcagtaatatgtattcgcctggcaatgcatattccccaagctcatcaaattac
tcacccaactcgccgtcgtattcaccgatgtcgccgtcatattcgccgtcaagtccttcg
tactcgcctacgtcgccctgctactcacccacctcgccttcgtattcgccgacttcgcga
aactatactcccgtcacgccttcatattcgccgacgtcgccaaactattcggcttcgccg
cattactcgcccgcatcgccggcatactcacagacaggtgttaaatattcgccgacatcg
ccaacgtattcgccgccttcgccgtcatatgacggatcaccaggctcgccacaatatacg
ccaggctcgccacaatattcgccagcctcacccaaatattcacccacttcgccgctctat
tcacccagttcgccgcaacactcgccgtcgaaccaatacagtccaacaggatcaacatat
tcggcgacaagtccacgctattcaccaaacatgtccatctactcgccgagcagcaccaaa
tattcccccacatcgcccacgtacacgcccacagcgcgcaactattcgccaacatcgcct
atgtactcgcccacagcgccctcgcactacagtccgacgagtccggcatattccccgagc
agtcccacattcgaggagagcgacgattag
DBGET
integrated database retrieval system
