Dermatobacter hominis: LH044_09180
Help
Entry
LH044_09180 CDS
T09351
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dhi
Dermatobacter hominis
Pathway
dhi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LH044_09180 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dhi03400
]
LH044_09180 (mfd)
Enzymes [BR:
dhi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LH044_09180 (mfd)
DNA repair and recombination proteins [BR:
dhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LH044_09180 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
UB2H
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
UDY37696
LinkDB
All DBs
Position
complement(1954610..1958161)
Genome browser
AA seq
1183 aa
AA seq
DB search
MVAPPAPTPSSGASAPAHPEPPEAPLEPLLGVLREEPGLVGALGRRSTVLVLPDAARAAS
VAGLTALSTRRPIVVAVPAVADAERLAGDLRAFLPRDAVELFPSWETLPFERVSPSIETM
GQRLRVMWRLRAGDDSLQVVVAPARALAQRLGPEVEDVEPIVVRPGDRVDQQQLVERLVL
SGYRREYQVEHRGEVAVRGSIVDVFPSTADRPVRIDLWGDEVDRLAEFSVADQRSGTDLA
QVELHPARELLPTDAVRERAERLIATDPWGREQWQRLADGEVFEGMEAWLPWLVEHGAVP
ADGSPEHVLLDLLGPDGLVLLVEPRRLRDRVSDVLAEEADLGSTLARTWGLEDDHDLPRL
HVDLDRLLAHTEAPTWSVAAVPDAPDTPAVASSTWPPAVGGGEALLAQLRQLVGDGYRVV
VCADGAGSAVRLQKLISEHGLTFPVLDGDGDGSVDAARLLAPGGKVVVAPIDRGCILPGV
QLALLAEADLTGRRRTHRPPRAPRRDAQRFYEDLKVGDYVVHQHHGVARFAGMVERTMGG
AARDYLLLEYRGDDKLYVPSEQIDAIRLYSGGETPSLNRMGGADFARTKAKVRSAVAEIA
QELVVLYQKRQAAPGHAFAEDTPWQREMEAAFPFQETPDQLTAIRDVKEDMESTVPMDRL
VCGDVGFGKTEVAVRAAFKAVQDGKQVAILVPTTLLAQQHFQTFSDRFAGYPVRVEVLSR
FLTNAQAREVTEGLASGAVDVVIGTHRLLSGDVAFQRLGLLVVDEEQRFGVSHKEAIKQM
KADVDVLTLSATPIPRTLEMSLTGIRDLSLLNTPPAARQPILTYVGEYDERAVAEAIRRE
LLREGQVFYVHNRVRDIEEQAARIRELVPEARIAVAHGQMDEGTLERVVLDFWEGAFDVL
VCTTIIESGIDMPTVNTLVVERADLLGLGQLHQIRGRVGRSGQRAYAYLFFPPERQLSEE
AYERLKTIGETTELGSGFRIAMRDLEIRGAGNLLGTGQTGHVAAVGYDLYVQMVNEAIAQ
LNGEPVVEAKEITLELPLPAHLPADYVERDDLRLDAYRRLAAVQTQADVDDIADEWVDRF
GPVPDPAANLLAIARLRAECVRTGVEDVAVTKASALSGPGWVARISPIRLPQSKQMRLAR
LYKGAVYKEEQSQLQLPVKAGASLATDLVEALQQLLPPPADEG
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atggtcgcacccccagctccgaccccgtcctccggcgcgtccgcgcccgcgcaccccgaa
ccccccgaggccccgctcgaaccgctgctcggcgtcctccgggaggagcccgggctcgtc
ggcgcgctcggtcgccggtcgacggtgctggtgctgcccgacgccgcccgtgctgcgtcg
gtcgccgggctgaccgcgctgtcgacgcgccgaccgatcgtcgtcgccgtgccggccgtg
gccgacgccgaacggttggcgggcgacctgcgcgccttcctcccccgggacgccgtcgag
ctgttcccgtcgtgggagaccctgccgttcgagcgggtcagcccctcgatcgagacgatg
ggccagcggctccgggtcatgtggcggctgcgcgccggcgacgactccctccaggtggtc
gtggcgccggcgcgcgcgctcgcgcagcgcctcggacccgaggtcgaggacgtcgagccg
atcgtggtccggccgggcgaccgcgtcgaccagcagcagctcgtcgagcgcctggtgctg
tcgggctaccgccgcgagtaccaggtcgagcaccgcggcgaggtcgcggtccgcgggtcg
atcgtcgacgtcttcccgtcgaccgccgaccggccggtgcgcatcgacctgtggggcgac
gaggtcgaccgcctggccgagttctcggtggccgaccagcgcagcgggaccgacctggcg
caggtcgagctgcacccggcccgggagctgctgccgaccgacgccgtacgcgagcgggcc
gagcgcctgatcgccaccgacccgtggggccgggagcagtggcagcggctcgccgacggc
gaggtcttcgaggggatggaggcgtggctgccgtggctggtcgagcacggcgccgtgccc
gccgacgggtcgcccgagcacgtgctgctcgacctcctcggccccgacgggctggtgctg
ctcgtcgagccgcggcgcctgcgcgaccgcgtgtccgacgtgctggccgaggaggccgac
ctcggctcgacgctcgcccggacgtggggactcgaggacgaccacgacctgccacggctc
cacgtcgacctcgaccgcctgctcgcgcacaccgaggcgccgacctggtcggtagcggcg
gtgcccgacgcgcccgacacgccggccgtcgcgtcgtcgacctggcccccggccgtcggc
ggcggagaggccctgctggcccagctgcgccagctcgtgggcgatgggtaccgcgtggtc
gtctgcgccgacggcgccggctccgccgtccgcctccagaagctcatctcggagcacggg
ctcacgttcccggtcctcgacggcgatggcgacggctcggtcgacgccgcacggctgctg
gctcccggcggcaaggtcgtcgtcgcaccgatcgaccggggttgcatcctgcccggcgtg
cagctggcgctgctggccgaggccgatctcaccggccggcgccggacgcaccgcccgccg
cgtgcgccgcgccgcgacgcccagcgcttctacgaggacctgaaggtcggcgactacgtc
gtccaccagcaccacggcgtcgcccgcttcgccggcatggtggagcgcacgatgggcggc
gccgcccgcgactacctgctgctcgagtaccgcggcgacgacaagctgtacgtcccgtcg
gagcagatcgacgcgatccggctgtactcgggcggcgagacgccctcgctcaaccggatg
ggcggggccgacttcgcccgcaccaaggcgaaggtgcgctcggcggtcgccgagatcgcg
caggagctcgtcgtcctctaccagaagcgccaggccgcacccggccacgccttcgccgag
gacacgccgtggcagcgcgagatggaggcggcgttcccgttccaggagacgcccgaccag
ctcacggccatccgcgacgtcaaggaggacatggagtcgacggtcccgatggaccggctc
gtgtgcggcgacgtcgggttcggcaagaccgaggtcgcggtccgcgccgcgttcaaggcg
gtccaggacggcaagcaggtggcgatcctcgtgcccaccacgttgctcgcccagcagcac
ttccagacgttctccgatcgcttcgccggctacccggtgcgcgtcgaggtgctgtcgcgg
ttcctcaccaacgcccaggcccgtgaggtcaccgaggggctcgcgtccggcgccgtcgac
gtggtcatcggcacgcaccgcctcctgtcgggcgacgtcgccttccagcggctcggactg
ctcgtcgtggacgaggagcagcgcttcggcgtgagccacaaggaggccatcaagcagatg
aaggccgacgtcgacgtgctcacgctctcggcaacgccgatcccgcggacgctcgagatg
agcctcaccgggatccgcgacctgtcgctgctgaacacgccgcccgcggcccgccagccg
atcctcacctacgtcggcgagtacgacgagcgcgcggtggccgaggccatccgccgggag
ctgctgcgcgagggccaggtcttctacgtgcacaaccgcgtgcgggacatcgaggagcag
gctgcgcgcatccgggagctcgtgcccgaggcgcgcatcgccgtcgcccacggccagatg
gacgaggggacgctggagcgggtggtgctcgacttctgggagggcgcgttcgacgtgctg
gtgtgcacgacgatcatcgagtccggcatcgacatgccgacggtgaacaccctggtcgtg
gagcgcgccgacctgctgggcctcggccagctccaccagatccgcggtcgcgtcgggcgc
tcgggccagcgggcctacgcctacctcttcttcccgcccgagcggcagctgtcggaggag
gcctacgagcgcctcaagacgatcggcgagaccaccgagctgggatccggtttccgcatc
gccatgcgcgacctcgagatccggggcgcgggcaacctgctcggcaccggccagaccggc
cacgtcgccgcggtcggctacgacctgtacgtgcagatggtcaacgaggccatcgcccag
ctcaacggcgagccggtcgtcgaggccaaggagatcacgctcgagctgcccctgccggcg
cacctgcccgccgactacgtcgagcgcgacgacctgcgcctcgacgcctaccggcgcctc
gccgcggtgcagacccaggccgacgtcgacgacatcgcggacgagtgggtcgaccgcttc
ggcccggtgcccgacccggcagccaacctcctcgccatcgcccggctgcgcgccgagtgc
gtgcggaccggcgtcgaggacgtcgcggtcaccaaggcctcggcgctgtcgggtccgggc
tgggtcgcccggatctcgccgatccgcctgccgcagtccaagcagatgcggctggcccgg
ctctacaagggcgcggtctacaaggaggagcagtcgcagctgcagctgccggtgaaggcc
ggcgcctcgctcgccaccgacctggtcgaggcgctgcagcagctcctgccgccgcccgcc
gacgagggctga
DBGET
integrated database retrieval system
