Dyella jiangningensis: CH75_08290
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Entry
CH75_08290 CDS
T03074
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dji
Dyella jiangningensis
Pathway
dji03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dji00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CH75_08290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dji03400
]
CH75_08290
Enzymes [BR:
dji01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CH75_08290
DNA repair and recombination proteins [BR:
dji03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CH75_08290
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AHX13229
LinkDB
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Position
complement(1756748..1759306)
Genome browser
AA seq
852 aa
AA seq
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MSLRDYERKRRFDRTPEPRPEGSAIGTGRELFVVQLHHARRRHYDFRLQVGDVLKSWACP
KGPSYDPAVKRLAVEVEDHPVSYAAFQGDIPDGYGAGHVDTFDTGVWSAFGDPEEQLQKG
HLRFELFGQRLKGRWHLVRSHRAEKKPTWFLIKDQDAYASDVEADDLLDTAMVKSTQRAA
GKSGGAKEVAEKLKRTRRKAAPTTRHRRASPATWIGKIPGARKHALPAGFFKPELATLRT
SPPTGDLWLNEVKWDGYRILTTISDGTVELWSRNGLSWTEKLPEMRQAIEALGLSTGRLD
GELIAISDGRPDFNALQQTLSGERASPLLYMLFDMPYLEGFDLSRTALVDRKHALERLLE
DAPPQLRYSTHVVGHGEQVFQNASDNRLEGIMCKRADSPYRSGRGDDWVKVKRLESDEFA
VVGYTAAKGSRKGFGSLLLAKPAPDGDWTYMGRVGSGFSDDMLRDLTRSLAKAGTRVPSI
KHAGEAPRDAHWIPPTAVAEVFYRGIGNQGLLRQPSLKAMRLDKSPADLRSSDRGTDGGG
SDGRVKHMRTPVRRKQASRSEAIAITHPDREVYPGEGITKQDVADYYKAVMDWFLPGVLN
RPTSVIRWPNGIGKPSFFQKHIPTGGLKHVGSARLKEETGASAVYLYPESADSILELVQF
NAIEFHPWGAHVDNPDCADRVVFDLDPGPDVSWTRVKAAARLMRQLLDQLGLECFLRTTG
GKGLHVVVPLEPPSPWTQVKQFAQSFAQVLESMHPLEFIAVSSKARRSGKIYVDYLRNGR
GATAVASYSLRGRPGAPVAMPLRWSELGKLKSASQFNIKTAVARLKRQRSDPWEGIDKVR
QSLDAVIKSLSS
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgctgcgcgattacgaacgaaaacgacggttcgaccggacgcccgagccgcgccct
gagggttccgcgatcgggacaggccgcgagctgttcgtcgtgcagctgcatcacgcacgg
cgccggcactacgatttccggctgcaggttggcgacgtgctgaagagctgggcctgcccc
aaggggcccagctacgatcccgcggtgaaacgactggccgtggaggtggaagaccatccc
gtctcctatgccgcgttccagggcgatattcccgacggctacggcgccggtcacgtcgat
actttcgataccggcgtctggtcggcgttcggcgacccggaagaacaattgcagaagggg
cacctgcgctttgaacttttcggccagcggctcaagggccgctggcatctggtgcgcagc
catcgcgccgagaagaaacccacgtggtttctcatcaaggaccaggacgcctacgcctcg
gacgtggaggcggatgacctgctcgacaccgccatggtgaaaagcacgcagcgcgccgcg
ggcaagagcggcggcgccaaggaggtggccgagaaactcaagcgcaccaggcgcaaggcc
gcgccgaccaccaggcatcgtcgcgcgtctcccgcaacgtggatcgggaagattcctggc
gccaggaaacacgccctgcccgccggcttcttcaagcccgagctggccacgttgcggaca
tcaccgccgaccggcgacctgtggctcaacgaagtgaagtgggacggctatcgcatcctc
accacgatcagcgatggcaccgtcgagctgtggtcgcgaaacggtctttcctggaccgag
aaattgcccgagatgcgccaggccatcgaagcccttggtctttcgaccggccggctggac
ggcgagctcatcgccatttcggacggtcgccccgatttcaacgccctgcaacaaaccctc
tcgggcgaacgcgcctcgccgctgttgtacatgctgttcgatatgccgtatctggagggc
ttcgacctctcgcgcaccgcgctggtggatcgcaagcacgcgctcgagcgactgctggaa
gatgcgccaccccagctgcgctacagcacacacgtggtcggccacggcgaacaggtattc
cagaacgccagcgacaaccgcctcgagggcatcatgtgcaaacgcgccgactcgccctat
cgcagcggccgcggcgacgactgggtgaaggtaaagcgcctggagtcggacgagtttgcc
gtcgtgggctacacggccgccaagggctcccgcaagggcttcggttcattgctgctggcg
aagccggcgcccgatggcgactggacctacatggggcgcgtaggcagcggcttttccgac
gacatgctgcgcgatctcactcgctcgctggccaaggcaggcacgcgcgtgcccagcatc
aagcacgcgggcgaagcacccagggacgcgcattggatcccgcccaccgccgtggccgaa
gtcttctatcgcgggatcggcaatcagggcctgctgcgacagccaagcctcaaagcgatg
cgcttggacaagtcgcccgcggatctgcgcagcagcgatcgaggcaccgacggcggcggc
agcgacggccgtgtaaaacacatgcgaacgccggtgcgcaggaagcaggcaagccgtagc
gaggccatcgccatcacgcacccggatcgcgaggtctacccgggcgaagggatcaccaag
caggacgtggccgactattacaaggccgtgatggactggttcctgccgggcgtgttgaac
cgcccgacatccgtgatccgctggcccaacggcatcggcaagccgagctttttccagaaa
cacatccccacgggcggcctcaagcatgtgggctcggcgcgactcaaggaagaaaccggc
gcgtctgccgtctatctctaccccgagagcgccgattccatcctggaactcgtgcagttc
aacgccatcgaattccatccatggggcgcccacgtggacaaccccgattgtgccgatcgc
gtcgtgttcgacctggaccccgggccggatgtcagctggacgcgcgtcaaggccgcggcg
cggctgatgcgtcagctgctggatcaactcgggctggaatgttttcttcgcaccacaggg
ggcaagggcctgcacgtcgtcgtgcccctcgagccgccctcgccctggacgcaggtcaag
cagttcgcgcagagctttgcgcaggtgctggagtcgatgcatccgctcgagttcatcgcg
gtgagcagcaaggcccggcgcagcgggaagatctacgtggattatcttcgcaatggccgc
ggcgccaccgccgtggcgtcgtattcgctgcgcgggcgaccgggcgctccagtcgccatg
cccttgcgctggagcgagctgggcaagctcaagagcgcctcgcagttcaacatcaagacc
gccgtcgcgcgcctcaagcgccagcgctcggacccctgggaaggcatcgacaaggtgcgc
cagagtctcgacgccgtcatcaaatccctgtcgtcataa
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