Desulfofundulus kuznetsovii: Desku_0592
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Entry
Desku_0592 CDS
T01499
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
dku
Desulfofundulus kuznetsovii
Pathway
dku03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dku00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Desku_0592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dku03400
]
Desku_0592
Enzymes [BR:
dku01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Desku_0592
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Desku_0592
DNA repair and recombination proteins [BR:
dku03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Desku_0592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
zinc-ribbons_6
Motif
Other DBs
NCBI-ProteinID:
AEG14206
LinkDB
All DBs
Position
complement(621098..621922)
Genome browser
AA seq
274 aa
AA seq
DB search
MPELPEVETVKRTLKERLPGLTICGVDIYLPKIIQTPSPEEFCRQVVDKKILDVGRRGKY
LLISLSQGLMLVVHLRMTGQLVYTVTDEPRSKHTHLVFHLNNGHQLRFTDMRQFGRFWLV
PERDLQAVSGLKDLGVEPLSREFTIEFLEKELKARRTRLKTLLLDQTFISGLGNIYVDEA
LHRAGLHPSRPANTLTPGEVEALFQAIRAVLEEGIASRGTSVRDYVDGTGQAGTFQEKLR
VYGKSGRPCMRCGKTIERLRLGGRSAYFCPGCQK
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccggaggtagaaacggtcaagcgcaccctgaaggaaagattacccggc
ctcaccatctgcggcgttgacatctatcttcccaaaatcatccagacgccttcaccggag
gaattctgccgccaggtggtggacaaaaagatcctggacgtaggccgccggggcaagtac
cttttaatctccctctcccaggggctgatgctggtcgtccacctgcgcatgacggggcag
cttgtttacaccgtcacggatgaaccccggtccaaacacacccacctggtttttcacctg
aacaacggccaccagctgcggtttaccgatatgcgccagttcggccgcttctggcttgtg
ccggaaagggatctgcaggccgtcagcggcctgaaagatctgggagtggagcccttaagc
cgggaatttaccatagaatttctggagaaggaattaaaggcgcggcgcacccgtttaaaa
acccttttactggaccagacatttatttccggcctgggcaacatctacgtagacgaagcc
ctccaccgggcggggctgcacccctcaagaccggcaaacaccctcactcccggggaagtg
gaggcccttttccaggccatccgggcggtgctggaagagggaattgccagccggggtacc
agcgtgagggactatgtggacggcacgggacaggccggtacctttcaagaaaaactaagg
gtttacggcaaaagcggccggccctgcatgcggtgcggcaaaactatcgaacgcctgcgc
ctgggtggccgcagcgcctacttttgtcccggatgccagaagtaa
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