Dactylosporangium matsuzakiense: Dmats_03040
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Entry
Dmats_03040 CDS
T08700
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dmat
Dactylosporangium matsuzakiense
Pathway
dmat03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dmat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Dmats_03040 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dmat03400
]
Dmats_03040 (ligD)
Enzymes [BR:
dmat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Dmats_03040 (ligD)
DNA repair and recombination proteins [BR:
dmat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Dmats_03040 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
UWZ45522
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All DBs
Position
673882..674769
Genome browser
AA seq
295 aa
AA seq
DB search
MPERLHVEVDGRRLDISNLDKVLYPQAGFTKGEVLDYYTRIAPTLLPYLRDRPLTRTRYP
NGVEGAGFFEKNAPAATPEWVRTVRLPVPGSAKNRENIDFIVAEELATMVWLANLAALEL
HTPQWRVDAGGHALDPDQMVVDLDPGPPAGLPECYAVALLLRERLAVDGLSGCAKTSGKK
GMQLVVPLPGDESADDISGYAKAVADELARAHPGLIVSKMAKQLRPGKVFIDWSQNNAFK
TTVAPYSLRAGAVPTVSAPLTWAEVEAGELTATDLTPSVVLERVETLGDLLECGE
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagcgcctgcacgtggaggtggacggccgccggctcgacatctccaatctcgac
aaggtgctgtatccgcaggccggtttcaccaagggcgaggtgctcgactactacacgcgc
atcgcgccgacactgctgccgtatctgcgcgaccgccccctgacccgcacccgctatccg
aacggcgtcgagggtgccggcttcttcgagaagaatgcgccggccgcgaccccggaatgg
gtgcgcacggtccgcctgcccgtccccggctccgccaagaaccgcgagaacatcgacttc
atcgtggccgaggagctggccacaatggtgtggctggccaacctggccgcgctggaactg
cacacgccgcagtggcgggtcgacgccggcggccacgccctcgaccccgatcaaatggtg
gtcgacctggacccggggccgcccgcgggcctgccggagtgctacgcggtagctctgctg
ctgcgcgagcgcctggccgtcgacggcctttccggctgcgcgaaaacgtcaggcaagaag
ggcatgcaattggtggtaccgctacccggcgacgaatccgccgacgacatcagcggctac
gccaaggccgtggccgacgaactggcccgggcccaccccgggctcatcgtgtcgaaaatg
gcgaaacagctccgcccgggcaaggtgttcatcgactggagccagaacaacgccttcaaa
accacagtcgcgccctattcactgcgcgccggcgccgtcccgaccgtgagcgcgccgctg
acctgggcggaggtcgaggccggcgagctcaccgccaccgacctgaccccgtccgtcgtg
ctggagcgcgtcgagaccctcggcgacctactggagtgcggcgagtag
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