Dehalococcoides mccartyi GY50: GY50_0461
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Entry
GY50_0461 CDS
T02938
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
dmg
Dehalococcoides mccartyi GY50
Pathway
dmg03030
DNA replication
dmg03430
Mismatch repair
dmg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GY50_0461 (holB)
03430 Mismatch repair
GY50_0461 (holB)
03440 Homologous recombination
GY50_0461 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dmg03032
]
GY50_0461 (holB)
03400 DNA repair and recombination proteins [BR:
dmg03400
]
GY50_0461 (holB)
Enzymes [BR:
dmg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GY50_0461 (holB)
DNA replication proteins [BR:
dmg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GY50_0461 (holB)
DNA repair and recombination proteins [BR:
dmg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GY50_0461 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
AAA
DNA_pol3_gamma3
AAA_16
AAA_5
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHB13244
LinkDB
All DBs
Position
414395..415414
Genome browser
AA seq
339 aa
AA seq
DB search
MWRIIGQDKVVSFLGNSLGQDKLCHAYVFYGPSGVGKQRMALTFAQALNCQASQPPCQEC
LVCERILSGNHPDIIHLELLSAEDASDGKAKAEIGVKQVEDIQRAASLPPFEGKYKVFII
HHAEKLSQESSNRLLKTLEEPGSLNIFILLTADKSLLLPTVISRCQILELRYVEINLIRD
ALLEQGLAEEKAELLSHLSHGRIGWAMEAASNPEILEERKANLEKIILVLGQDEEERFDY
ASDISNLFAQNHMAAEAVLDMWLAVFRDMLLLKADASQNMTNIDYKDILYMASDKLGLAD
IRIAIDNILKARSQLRANANPRLCLEVLMLSLPLVKEGL
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgtggcggataataggtcaggacaaggtcgtctcctttctgggtaacagcctcggtcag
gataaactgtgccatgcttacgtattttacggcccgtcaggggtaggtaaacagcggatg
gctctaacttttgctcaggcacttaattgtcaggcatcacagcccccgtgtcaggaatgt
ttggtttgcgagcgtattttatctggcaatcaccctgatattatccatctggagttgctt
tcggccgaagatgcctctgacggcaaggccaaagctgaaataggtgttaaacaggtagag
gatatccagcgtgccgccagtttgcctccgtttgagggaaagtacaaggtttttattatt
caccatgcagaaaaactttcacaggaatcttcaaatcgccttctaaagacactggaagag
cccggttccctgaatatatttattttgctgaccgctgataaatcacttttgctgcccact
gtgatttcgcgttgccagattctggagttaagatacgttgagataaaccttatccgggat
gctttgcttgaacagggtttggctgaagaaaaagccgagcttctgtctcacctgagccac
ggcagaataggctgggcgatggaagcagcgtcaaaccctgaaattttggaagaacgtaaa
gctaatttagaaaagattatattggtactggggcaggacgaagaagaacgttttgattat
gcttctgatatctcaaatctgtttgctcaaaaccatatggcggctgaagctgtactggat
atgtggctagccgtatttagggatatgcttctgctgaaggctgatgccagccaaaacatg
actaatattgattataaagatatactatacatggcctctgataaacttgggcttgcagat
atacgcattgctatagataatatacttaaagcccgaagccagctgcgggcgaatgccaat
cccagactgtgtctggaggtgcttatgcttagtttacccttggtaaaggaaggactataa
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