Daphnia magna (water flea): 116917509
Help
Entry
116917509 CDS
T07514
Name
(RefSeq) ribonuclease 3
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
116917509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116917509
03009 Ribosome biogenesis [BR:
dmk03009
]
116917509
03036 Chromosome and associated proteins [BR:
dmk03036
]
116917509
Enzymes [BR:
dmk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
116917509
Messenger RNA biogenesis [BR:
dmk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
116917509
Ribosome biogenesis [BR:
dmk03009
]
Eukaryotic type
90S particles
RNase
116917509
Prokaryotic type
rRNA processing factors
116917509
Chromosome and associated proteins [BR:
dmk03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
116917509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
Herpes_UL56
Motif
Other DBs
NCBI-GeneID:
116917509
NCBI-ProteinID:
XP_032778908
LinkDB
All DBs
Position
LG1:12770228..12774852
Genome browser
AA seq
1155 aa
AA seq
DB search
MDDHNNTNQQPSYPFNNGYHYSQTNHFIPTMHYNFPPPPFHEMNIPPPSLPLGCEFQQPP
PYTLAPHALQLSYPPMPDPFTPSYSQVSQYSTGQYVTLQQHVPAWNPVQSNATQPLVSRL
QGPYSGHKPVSKRPLSSRASEKPAMSRSISLATGRSEQRKASQNSTYEEEHITEPDQYSS
ITPEEIMENERKIWTRCAPADLYYTRDVANPRLMRGTDKLKITINQFSNDLLKRGDEART
MQPKFDYPSRKTRKHGAHCGGPCKEKAKKACESDSSTSDSSSEEEDEVDLVLQELERKKQ
HPARLHPELWYNDPGEMNDGPLCRCSFKARRTGIRHGIYAGESSAMICDRNSNNGDILHH
YRVTISPPTNFLLKRPTVIHHDGHEFIFEGFSLLSHYPLDKVPTCKVIRFNIEYTIVYIE
EKVPDNFTIEELELFSHYLFHELLELVDFNLHAAGDASGCPQFHILPRFVRDLPDHGKEM
LSMNQVLTYLIQQNVPVVDDTELGYQLKLPQHEWQNMADFTKGMIVTKPGAKPCSLRVDQ
LDRDQLRADVISYPEIVHFGIRPPQLSYAGNPEYQKAWRDYVKFRHLLANMPKPSFEDKR
KLEAKENRLQEMRLQNNMKRDVTVAVSSQGFYRTGIMCDVVQHGMLLPVLVCHLRFHKSL
DVLEERIKYRFNNRYLLQLALTHPSYRENFGTNPDHARNSLTNCGIRQPEYGDRRIHYMN
TRKRGINTLINIMSRLGKKQETESSITHNERLEFLGDAVVEFLASIHLYHMFPDLEEGGL
ATYRAAIVQNQHLAQLAKNLRLDQFMLYAHGSDLCHDLELRHAMANCFEALMGALFLDGG
ISVADRVFSNTLFMDEKDLLDVWVNYPSHPLQEQELGGDRKWISSFPLLQKMVEFEESIG
TQFTHIRLLARAFTDRSIGFNNLTLGSNQRLEFLGDTVLQLIASEYLYKFFPEHHEGHLS
LLRSSLVNNRTQAVVCDDLGMTNYALYSSPKAELKTKDRADLLEAFLGALYVDKGLEYCQ
TFCQVCFFPRLQDFILHQDWNDPKSKLQQCCLTLRTMDGGEPDIPVYKVIECKGPTNTRV
YSVAVYFRGVRLASASGHSIQQAEMNAAKEALEKSKDLFPQLNHQKKVIGNTANVPGRKT
GSGCAYADEEGEITP
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atggatgaccacaacaacacaaatcagcagccatcgtatccctttaataatggatatcac
tacagtcaaaccaaccatttcattccaaccatgcactataattttcctccaccgcctttc
catgaaatgaatatcccacctccttctctgcctttaggatgtgaattccagcaaccgcct
ccttacacacttgctccacatgcactacagttaagttatccaccaatgcctgatcctttt
accccaagctattctcaagtcagccaatattcgactggtcaatatgttacacttcagcaa
catgtaccagcttggaatcctgtgcagagtaatgctacacagccattggtttcgagactc
caaggaccatattcaggccacaagccagtgtcaaaaagaccactgtccagtagagcaagt
gaaaagccagctatgtcgcggtccatctctttagctactggaagatctgagcaaagaaag
gcatctcaaaattcgacttatgaggaagaacatatcactgagccagatcaatattctagc
ataactcctgaagaaatcatggaaaatgagcgaaaaatatggactcgctgtgcacctgct
gatctctactatacccgtgatgtggctaaccctcggttgatgcgtggcactgataaattg
aagattacaatcaatcagtttagtaatgaccttcttaaacgtggagacgaagcgcggacg
atgcaaccgaaatttgactatccctcccgcaagactaggaaacatggtgcacactgcggc
ggcccttgtaaagagaaagccaaaaaggcttgtgagtctgattcaagtacctccgattca
tcgtcggaggaagaggatgaagtcgacttggtactccaagaattggaaagaaaaaaacag
catccggctcgacttcatcctgagctgtggtataatgaccctggtgaaatgaatgatggc
ccgttatgtcgctgcagctttaaagcccgtcgaactggcattcgacatggaatttacgca
ggagaatcgtcagccatgatttgtgaccgtaactcgaataatggggacattttgcatcac
tatcgggtgacgatttcgcctccgacgaattttcttttaaagcggccgacagttatccat
catgatggacatgagttcatttttgaaggtttctcacttctgtctcactacccgctcgat
aaagtgcctacctgcaaggtcattcgtttcaacattgaatatacaatcgtctatattgaa
gaaaaagttccagataactttaccattgaggaactcgaattatttagccattatttattc
cacgaattgcttgaattggtcgactttaaccttcatgcagctggggatgcaagtggttgt
ccccaatttcatatccttccgcgttttgtaagagacctacccgaccacggcaaggaaatg
ttgtcgatgaaccaagtgcttacgtatctaattcagcaaaatgtacctgtggtagacgac
acggagttgggttaccagctcaaattacctcagcatgagtggcaaaatatggcagatttt
acaaaaggaatgattgtcacgaaaccaggagccaaaccttgttcattaagagtagaccaa
cttgatcgtgaccaactacgagcggatgtcatcagctacccggagattgttcattttggc
attcggccacctcagctcagctatgccggcaatccagagtaccaaaaggcgtggcgagac
tatgttaaatttcgccacctactcgctaacatgccaaagccatcatttgaggacaaacga
aaactagaagcaaaagagaaccggcttcaagagatgcgactgcagaataatatgaaacgt
gatgtgacagtcgccgtctctagtcaaggattttaccgcaccggaattatgtgtgacgtc
gttcagcacggaatgttgcttcccgttctagtttgtcacttacgttttcataagtcgctg
gatgttcttgaagaaaggattaaatatcgtttcaataatcggtatttgctacaattagct
cttactcatccgtcctaccgcgaaaactttggaaccaacccagaccacgctcgcaattcg
ctaaccaactgcggtatccgtcagccagagtacggtgacaggcgcatccactatatgaac
acgcgaaaacgtggaataaatacgttaatcaacatcatgtcccgtcttggcaaaaaacag
gagacggagtctagcatcactcacaatgaaagattagaatttctcggagatgctgtggtc
gagttcttagcttccattcacctttatcacatgtttcctgatttagaagagggaggtttg
gcgacctatcgagcagccattgtccagaaccaacaccttgctcagttagccaaaaacctt
cggcttgatcaattcatgttatacgctcatggatcggatttgtgtcacgatttggaattg
agacatgcgatggcaaactgttttgaagcattgatgggagcactcttcctggatggtgga
atatctgtggctgatagggtgttttccaacacactcttcatggacgaaaaagacttgttg
gatgtctgggtcaactatccgtctcatccgttgcaagagcaagaattgggtggagatagg
aaatggatctcgtcctttccccttttacaaaagatggttgaatttgaagagtcgattgga
acacagttcacccatattcgacttcttgctcgagccttcaccgatcgcagcattggcttc
aataatttaacgttgggatcaaaccagcgattggagtttctaggcgacactgttcttcag
ctgatagcatccgaatatctctacaaattcttcccggagcatcacgagggacatttatct
ttactgcgaagttcactcgtcaacaatcgcacacaggccgttgtgtgtgacgatttgggc
atgaccaattacgcactgtattcaagtcctaaagctgaactgaaaacaaaagacagagcc
gatttattagaagcttttcttggcgcattgtacgtggataaaggactggagtactgtcaa
accttctgtcaggtttgtttctttccccgcttgcaagactttatccttcatcaggactgg
aacgatcctaaatcgaaacttcaacaatgttgtcttacgctgcgcacaatggacggtggt
gagccggatattccagtttacaaagtgattgagtgcaagggtccaacgaatacgcgcgtc
tattccgttgccgtttattttcgtggagttcgattggccagtgcatccgggcatagcatt
caacaagcggaaatgaatgcagctaaagaagctcttgaaaagtcaaaagatctcttcccg
caactgaatcatcagaagaaagttatcggcaacactgccaatgtacctggccgcaaaact
ggttctggttgcgcttatgcagacgaagaaggagagataactccctaa
DBGET
integrated database retrieval system
