Daphnia magna (water flea): 116921961
Help
Entry
116921961 CDS
T07514
Name
(RefSeq) uncharacterized protein LOC116921961
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmk03021
]
116921961
Transcription machinery [BR:
dmk03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116921961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
DUF4663
AAA_19
UvrD-helicase
ResIII
AAA_30
Helicase_RecD
CC2D1A-B_DM14
AAA_12
Motif
Other DBs
NCBI-GeneID:
116921961
NCBI-ProteinID:
XP_045027445
LinkDB
All DBs
Position
LG3:complement(11800989..11806207)
Genome browser
AA seq
1370 aa
AA seq
DB search
MANTASQKDLLDTIWHATRCFIGQELLSERKLVPVPYLSNADDFGLFSVFVKSKPENVSQ
KIKHSLAGACYHVIGHVSKVTELEKTDLDRLLNSAKPHTEDVGNQSVKWEKDVDLGCKSV
HLTIEGLHKFLIPLNLSEGDLCLEQNIPDLVGAKSVYIITDVMKASRVTACVTSHDGTME
RVSAVSVPIGFGYSKFRLTPEGLVAEQMKCEPAIHGKWVVVLNQLSVSLHRPPRKQPVIP
EKPVTPEEVLPAKNLPVVAEKHSTHLDSPTQGGPEKEFLVRNQYEDNETSSALTNSRRPY
LDDVKLKLDCRVVIEGLPKHFTVSGTNVTCSKTHTKKRVKGKSRLLCISDTESEGEEILE
NDNHHPKNPPVKAESKGKQLKNVINLEEPTSSLDDYSDEDGVIEPLTLNNPPRGRLTLAT
AGTSARRESENQSEPEETEDQRKKPAVSNVVTPRTAKIIPIRPQVSRKKKQISSIASLRE
KMCKDQGMESYVRCVHDATKKTDDRPSTSSLPIQVSRKKISRPKRVSKVPKSSTLNSVKA
KVTKKSRGDMFLKDLVGEEQMSKEGAKKGPTSALSGFCIPKLSKSTVESSSNGQEASSSS
GSSAQKRKHPDHDEDRLNQAEANAVDESTSVSYAFKKPQKRVARQNNSCDDDDRNGGSLS
SKFPNRRHDRPRDEALPLGRNKKWGPPNGIKNVPREDVASRHAGNREPTPHSGAQDNQQS
NHEEVGSSAQHDETIQLPMPDCEKIIRSPSLSASKRRKKVSIVEENNKIYEIEARAPTPP
LPLRTPVRSIDHTALTHDILYRICCWNYNWIAQQKLQQQQKNDEPPPLLAAANRENGQSL
PALSLLPVVSAYDSLEAYCTIFQSLMFHETWAILCKDMESRPSTPIRVLVCSKPKFCNGF
AILQCEAFSATRINEKDLVAITVPIAPQKPPAKYFGVVDQLVLRNWRKEDTDPRLLEPCK
PPNDPYMKMSFVLLVKFSNVPKELDKIDTITKITCLSTVLKQFILNADLSRSPLCDVILH
PSDFSDAFKLDTVDIEGKNDLLNPVQYKAVESITKTIVCASDREPKVALLQSPPGTGKSH
VIVELISRMLDTHYEKTNKYPRILVCAPSNNAVDEIAARLMHVRDARKSNYHIVRVGVTT
SMHPSVAKISLEELIKKHQQTIMETKESLESCKLRTLTEEHSLLKNNKTCLIASIDAANK
NGQSDEARMYARKLEQLEGQIEGVDRSLNECMKNHYNYFNTERMRSAFKKDVISGSQVIF
STLNSCRSREMENLFVQNRRGTAFLCCIIDEASQCTEPESLTPLVFGISKLVLIGDPDQL
PATVTSPYAARNRFDQSLFNRFYSSRLSTNSEDEEGVLMLDTQYRMAAKC
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atggctaacactgcttctcagaaagatttgctcgatactatttggcatgctactcgttgt
tttatcggtcaagaattactttcagagagaaaactcgtaccagttccctacctctcgaat
gctgatgatttcggcctcttctcagttttcgtcaagagcaaaccggaaaacgtaagtcaa
aagattaagcattcgctggcgggtgcttgttaccatgtaattggccacgtttccaaagtc
actgagctggaaaaaactgaccttgatcgtttgttgaacagcgctaaaccacacacagag
gacgtcggcaatcagtccgtaaagtgggagaaggacgtcgatttgggatgcaagtccgta
catttgaccatcgaagggcttcacaaatttctcatcccgctgaatttgagtgaaggagac
ctttgcctggagcaaaatattcctgatctggtcggcgccaaaagcgtgtacatcattaca
gatgtaatgaaggccagtcgcgttacagcatgtgttacaagccatgacggcacgatggaa
agagtttctgctgtttctgttccaataggatttggctattcgaaattccgattgactccc
gagggactcgttgctgaacagatgaaatgcgagcctgctatccacggcaaatgggttgtt
gtgcttaatcaactctccgtaagcctgcacagaccacctagaaaacaaccggttattcca
gaaaagccagttaccccggaagaagtattgcctgccaaaaatctacccgttgtagctgaa
aaacattctacccatttagattcaccaacacaaggaggccctgagaaagaatttctagta
cgcaaccaatacgaagacaacgagacctcttctgcgttaacaaattcaagacgcccgtat
ttggacgatgtgaaactaaagttggattgtagagtagttatcgaaggattgccaaaacat
ttcacagtttctggaaccaatgtcacttgcagcaaaacacacacgaaaaagcgtgtgaaa
ggcaaaagtcgtctgttatgtatttcggacactgaatcagaaggtgaagagatacttgag
aacgacaatcatcacccgaaaaatccccctgtgaaagctgagtcaaaaggaaaacagttg
aaaaatgttatcaacctggaggagcctacttcgagtctcgatgactacagtgacgaggat
ggggtcatagaacctcttactttgaataatcctcctagaggacgcttgacccttgcaact
gcaggcacgtctgcaaggagagaatcagaaaaccaatcggagccagaagaaactgaagat
caacggaagaaaccagccgtatcaaatgttgtaacaccgcgtacagccaagataatacca
atcagaccgcaggtctcccgcaagaagaaacaaataagtagtattgcttcacttcgagag
aaaatgtgtaaagatcagggtatggagagttatgtgcgttgtgtacatgacgcaacaaag
aagacggatgataggccatcaactagtagtctaccaattcaagtatcgcggaagaaaatc
tcgcgacctaaacgtgtatcaaaagtgccaaaatcatctacactaaactcagtaaaggct
aaagttacgaaaaaatcccggggagacatgtttttaaaggaccttgtcggtgaagagcaa
atgtctaaagaaggtgcgaagaaggggcccacttctgcattatcaggcttttgcatacca
aaactatcgaaatcaacggttgaatcgtcttccaatggtcaagaagcatcatcttcctca
ggttcatcggcacagaaaaggaagcatcctgatcacgatgaagatagattgaatcaagcc
gaagcaaatgctgtcgatgagtctacatccgtctcatatgccttcaagaagcctcaaaaa
cgagtagcccgacaaaataatagttgtgatgatgacgatagaaatggtggatcgttatcc
tctaagtttccaaacagacggcatgacagacctagagatgaagccctgccccttggaagg
aacaaaaagtggggtcctcctaatgggattaaaaacgtgccccgagaagatgtggcatca
agacatgctggtaatcgagaacctacaccacattcaggagcgcaagataatcaacagagt
aaccacgaagaagttggatcgtcagctcaacacgatgaaactattcaacttcctatgccg
gattgcgaaaaaataatacgatctccaagtctgtctgcatcaaaaaggaggaaaaaggta
tcgattgtagaagaaaacaataaaatttacgaaattgaggcacgagcaccaactccaccg
cttccactaagaacacctgttcgttctattgatcatacggcgctaacacacgatatactg
tacagaatttgttgctggaactataattggattgcgcaacaaaagctccaacaacaacag
aagaatgatgaaccacctccgttgctggcggcagcaaatagggaaaatggccaatctcta
cctgcgttgtctttacttccagtagtgtcagcctatgacagtctcgaggcttactgcacc
atcttccaatcactcatgttccatgagacatgggccattctttgcaaagacatggaaagc
cgtccatcaactcccatcagagtattagtttgttccaaacctaaattttgcaatggtttt
gcgattttacaatgtgaagctttttcggcaacgaggataaatgagaaagatctcgtagcc
ataaccgttcctatcgcaccacaaaagcccccagcaaaatattttggtgttgttgaccag
ctagtgctcaggaactggcggaaagaagacactgatccacgcttgctggaaccatgcaaa
ccgccgaatgacccttacatgaaaatgtcttttgttcttttggtgaagttttcaaacgtt
cccaaggaactagacaaaatcgacactatcacaaaaataacgtgcttaagcaccgtgctg
aaacagttcattctaaatgctgatttgtctcggtcaccactgtgcgacgttattcttcat
ccaagtgatttctcagacgctttcaagttggatacagttgatattgaaggaaagaatgac
ttgttaaatccagttcagtataaagctgtggaatcaattacaaaaacaatagtttgcgca
tcagaccgcgaacccaaagttgctcttttacagagtccaccaggtaccggtaaatcgcac
gtcatcgtcgaattgatttcccggatgttagatacacactacgagaagactaataagtat
ccacgcatattggtttgtgccccgtcaaacaacgcagttgatgaaatagctgcccgcctc
atgcatgttcgtgatgcaagaaaaagcaattatcatattgtacgagtcggtgttacaacg
tcaatgcacccaagcgttgcaaaaatctcgttggaagaattaataaagaaacaccaacaa
acaattatggaaacaaaggaatccctggaaagctgcaaacttcgtacgttgacagaagaa
cacagtcttctaaagaacaataagacatgcttaattgcttcgatcgatgccgctaacaaa
aacggtcaatctgatgaagcgcgaatgtatgcaagaaagctagagcaattagaaggtcaa
atcgaaggagttgaccggtctttaaacgaatgcatgaagaatcactacaactatttcaat
actgaaagaatgcgttctgctttcaaaaaagatgttatttcggggtctcaagtaattttt
tcaacgttaaactcctgtcgcagcagagaaatggaaaacttgttcgtccagaatcgaagg
gggacagcatttctttgttgtataatagacgaagcgtctcagtgcacagaacccgaatca
ctgacaccacttgtatttggcatcagcaaattggttttaattggggatccagaccaacta
ccagctacagttacatctccgtacgctgcacgaaatcggtttgatcagtctcttttcaac
cgtttttattcgtcgcgattatcaactaattcggaggacgaagagggtgttcttatgttg
gatacgcaatatcggatggcagcgaagtgttag
DBGET
integrated database retrieval system
