Daphnia magna (water flea): 116928276
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Entry
116928276 CDS
T07514
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116928276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116928276
03036 Chromosome and associated proteins [BR:
dmk03036
]
116928276
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
116928276
Chromosome and associated proteins [BR:
dmk03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
116928276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
116928276
NCBI-ProteinID:
XP_032791231
LinkDB
All DBs
Position
LG8:complement(5050852..5058003)
Genome browser
AA seq
1843 aa
AA seq
DB search
MFGQNRPTFGAPSTNTFGSFGTNTSTGFGQSSFGAKPTGTAAPTFQPTGFGSNTSMFGSS
ATATSQPSSGLFGTPSATFGATQPTAGFGTPAPNTGFGGFGGGASGGSLFGTPAPSTGMF
GSNVQPAAPASGTTGMFGAATNTGFGTQAKPAFGFGATSTSNSLFGQPQTQPTQTTSLFG
QQTAQAAPSTGTGLFGSSSFGSTMGAFGSSSGTTGTTVKFNPPAGTDSMMKNNVQTTIST
HHQCITCMKEYENKSLEELRFEDYSVGRKGPTPGAGPQPGGLFGATTATTQATPLFGTQQ
TPLFGTPASTMGQTSFFGQPQQQQAQQPAFGTKQIGFGQATTSTTSTFGFGQAAPQQQQA
SIFGQPQQAKQFGTSIFGPPTTSQPAPTFGTQAPATGFGFGTPQQTQSLFNAPKTAMGVQ
TSTAGFGFPQTTTTQSAGTNIFGAKPVTGFGATSTPAFGATPAQTTTPAFSGFGTAGTGL
FTPGQPAFGVKPAGPTFGTATSTAPTLGFGQTPSMFGGTSAASAKPGLFGTTTSFGSSGF
GTTPSFGTNVGGMGTTAPGSLFGGTGIGAPTSLSFGTTQPAAGASTSQLPIHQYILTLSE
ISQSSDHPLFRKMLEPSGKAEELIKSSSRTSLSNGAAPTPPQYRISPMPSSKIRTKALLN
GSSTSGGRRSIFEGLSDEEEGEETGTASEAKTDFFVPRRSVKKLQLKAITLDTTVEAEDK
ADETEPIKAAPAISPEDRTPVVDSRPNPRIREELDDSLTVLKIRRPTVAFLNQSVALDRS
SMLDETGIGEGEVTVAEEISETVEEEIVPPHPAGIVLRRCGYSTIPTMEELAIKGLDESG
KCIVTSFSIIRRGYGQIFFEGPLDVANLNLDEIVLFRHKEVTVYPDDSKKPPEGEGLNRR
AEITLDRVWPVDKTTGEYITNPERLAVMRYEERLARAAHRLQAKFIEYRPETGSWVFRVN
HFSKYGLEDSDEENELPVVPPKAATLPTSQGQAAQVTTTGAGLGGISTTIVQATSMSMTF
EEDMGVEDDMVITQFGDGFEDSARIQSPPPVSTQLARTLGMPSQRVQIMKASFFDADNDF
IQDVSMGVGSFLEQSVRMSQSIAPRKDMSRMFNDSPVRSPGSLFKSSAIAAIQPPDDVNK
SHVPMEQTFNATAKMQDFTGIENLSTYVRLEHVRNPEKCRKVVPRFATAEVALSRSVMQG
KFGIVTDAALFQNRQFRVGWGPDLHHLELKATKRLSLLTVKTSDLRQSINPEEDVFTVES
KNPYVVFLATYLNHTKQNVVKGVPTLCPLPGSQAVGFLKAATESLTSKLKTSGSSETRQL
LNYMGKVWNLCIALWGPLDVESGSHAETMARKETLTHWLEEAATETNITGLNEEEEVLTL
LARHDVAGAARLAHKNGEYYLALLISQAGSSLAFKGMLQRQLHLWTENRADAFITEDRLR
VFALLAGITVWETTHGKINTCEGMDWIKALAHHLWYVISPVGSITDALLEYEAACGISKD
ESGVEVYASGPSPSYSQSPTQFRDLCFQLISLYCHRTIPLEKLINPLSHTWNVCENVLSW
LLWQQLQALGYSHLSETAAAQLTTAFASQLENCGLWHWAIFVAMHLKSTPSFIQSFVEDI
LVRHIGQEKDEKCERFLVEKLGIPQQWIEKSRAVRALYSFCPRLQATSLLAAGLYNQAHD
VICDELAPEAILSESYQELEELLAPLADPERSSMIADWYLKGKVYWNYITVVKAVDRILK
QDNSNEKGMQLEKLTPDLTSLCNLVSSLPVPTAKHRLVRTEIAQKAAYILKNVIGLQSVN
ASEEIVVPPRFVLPQLRQLPVTQDYSLSELNNVVRAYFLELKV
NT seq
5532 nt
NT seq
+upstream
nt +downstream
nt
atgtttgggcaaaatagaccaacttttggagcaccatctacaaatacatttggcagtttt
ggtactaacacatcaacagggtttggccagtcatcatttggtgcaaaaccaacgggaact
gctgcaccaactttccaaccaactggttttgggtccaatacatctatgtttggaagttca
gctactgcaacaagccaaccctctagtggtttgtttggtactccttctgcaacttttgga
gctacacagccaacagcaggatttggcacacctgcccctaatactggctttggagggttt
ggtggtggtgcgtctggtggaagcttatttggaactcctgccccttcaacagggatgttt
ggatccaatgtccaaccagctgctcctgcaagtggaacaactgggatgtttggagcagca
acaaacacagggtttggaacacaggcaaagcctgcatttggctttggtgccactagtact
tccaacagcttgtttggtcagcctcaaacccaaccaacccaaaccacctcgctttttgga
cagcaaacagcacaagccgcaccatctactggtactggattgtttgggtcgtcatctttt
ggcagcactatgggagcgtttggctcttcctcggggaccactggcacaacggttaaattt
aatccaccagcagggacagactcgatgatgaagaacaatgttcaaactactattagtact
catcatcagtgtatcacttgcatgaaagagtacgaaaataaatcattggaagaactccga
tttgaagattactctgtcggaaggaaaggaccaactccgggagccggtccacaacctgga
ggactatttggagcgaccactgctaccactcaggccactcccttatttggaactcaacaa
acgcccctttttggaacaccagcatctactatgggacagacgagcttttttggacaacct
caacagcaacaagcgcagcaacccgcctttggaacaaaacaaattggttttggccaagcc
actacttcgactacgtcaacgtttggtttcgggcaagcagcaccacaacaacaacaggca
agcatcttcggtcagccgcagcaagccaagcaatttggcacgtcgattttcggtccgcca
actacgagtcagcctgctcccacattcggaacacaagcaccggcgactgggtttggattc
ggcactccccaacaaactcaaagccttttcaatgcccctaagacagctatgggggtccag
acttcaacagcagggttcggtttcccacagacgactaccactcagtccgctggaacaaat
atatttggcgccaaacccgtaactggctttggagctacatctacccctgcgtttggagca
acccctgcccaaacaaccacaccagcctttagcggatttggtaccgccggaactggtttg
ttcactcctgggcaacctgcttttggggtgaagccagctgggccgactttcggtactgcg
acatctactgcgccgacccttgggttcggccagactccttcaatgttcggaggaacatcg
gctgctagtgcgaagcctggtctgtttggtactacaacatcttttggcagttctggtttt
ggaacgacacctagctttggaacaaatgttggaggaatgggtactactgcgcccggctct
ctctttggtggtaccggtattggcgctcctacttccctgtctttcggaacgacgcaacct
gctgcaggggccagtacttctcagcttcccatacatcaatacatcttgacgcttagtgag
atttctcaatcaagtgatcatcctctcttccggaagatgttggaaccatcaggtaaagca
gaagagttgatcaaatcgagctcgcgaaccagcttgtccaacggtgctgcaccaactcct
ccccagtaccgaatttctccgatgccctcgagtaaaatccgcaccaaagctttacttaac
ggatcatcgactagcggtggaagacgatcaatatttgaaggattgagtgacgaagaagaa
ggcgaggaaacgggaactgcatcagaagccaaaacggatttcttcgtacctcgtcgaagt
gtcaagaaacttcagttaaaagcgattacgctcgatactaccgtcgaagctgaggataaa
gcggatgaaactgaacccattaaagcggcgcctgcaatctctccggaagacagaacgccc
gttgtcgattctcgacctaatccgagaatccgagaagaacttgacgatagtctgacggta
ttgaagatacgtcgtccgactgttgcattccttaaccaatccgtggcgttagatcgcagc
agtatgctcgacgaaactggaattggagaaggtgaagtcaccgttgcggaggagataagc
gaaacggtagaagaggaaatagttccccctcatcccgctggaatagttttacgtcgctgc
gggtattcaaccattccgacaatggaggaattggcaatcaaaggtttagatgaaagtggg
aaatgcatcgttacttcattttcaattatccgacgaggctacggtcaaatatttttcgaa
ggccctttggatgttgcgaatttaaatctggacgaaatcgtattgtttcgccacaaggaa
gtgacggtatacccagacgattccaagaagccacctgaaggagaaggactcaatcgccga
gctgaaatcacgttagaccgtgtctggcctgttgacaaaaccactggagagtacatcacc
aatcctgagaggttagctgtgatgcgctatgaagagcgacttgcgcgagctgcccatcgc
ctacaagccaaattcatcgaataccggccagaaacgggatcgtgggtattccgagtaaat
catttctcgaaatatggattagaagattcggatgaagaaaatgaactgcctgttgttccg
cccaaagctgctacccttccgacctcacaaggccaggcggctcaggttaccactactggt
gctggattgggaggcatttcgaccaccattgttcaagcgacttcaatgtcgatgacgttc
gaggaagacatgggtgttgaagacgatatggtgatcacgcagttcggcgatgggtttgaa
gactctgctcgcatccagtcacccccaccggtcagcacacaattagcaagaacattagga
atgccatcccagagagttcagatcatgaaggcttctttcttcgacgctgataacgatttt
atacaagatgtgtcaatgggtgttggaagttttctagagcagtcagtacggatgtctcaa
tcgattgcaccacgaaaagatatgagtcgcatgtttaatgactcgcccgtgcgtagcccg
ggaagtcttttcaaatctagcgccatagctgcgattcagccgccggatgacgttaacaaa
tcgcatgtgccgatggaacagacctttaatgccaccgccaaaatgcaagattttactggg
atagagaacttgtcaacttacgtccgattagaacatgtcagaaatccggagaaatgccgg
aaggtagtaccccgttttgctacagctgaagttgccctgtcgcgatctgtaatgcaaggc
aagtttggcattgttacggacgctgcattgttccagaaccgacagtttcgggtggggtgg
ggtcctgacttgcaccacctggaactcaaagcaaccaagcgtctttctttgttaaccgtg
aaaacgtccgacctaaggcagagtatcaatcctgaagaggatgtcttcaccgtcgaaagc
aaaaacccttacgttgtctttctagcgacctatctgaatcatacgaagcaaaacgtggtt
aaaggcgtcccgacactttgtccgttacctggttctcaggccgtcggtttcctgaaagca
gccaccgagagtctaacctcgaaattgaagacgagtggcagttccgaaacacgacaatta
ctgaattatatgggcaaagtctggaatctttgcatcgctctttggggacctttagacgtg
gaaagtggttcgcacgcggagaccatggccaggaaagaaacgttaacgcattggctcgaa
gaagccgccacggaaaccaacatcacaggtctcaatgaagaagaagaggttttgactttg
ctcgcccgccatgatgttgctggtgctgctcgccttgctcacaaaaacggcgagtactac
ttggcgctgcttatctcgcaagcaggatcgtctttggctttcaaggggatgctgcaacgc
caacttcacctctggacggaaaaccgtgcagatgcctttattactgaagaccgtcttcgg
gtctttgccttactggcgggaatcacagtgtgggaaaccacgcacggcaagatcaacact
tgtgaaggaatggattggatcaaagctctggcacatcatttgtggtacgtaatttcccca
gtggggagcatcaccgacgcactgctagagtacgaggctgcctgcggcatatcgaaagat
gagagcggcgtagaagtttatgctagtggaccatcgccttcctattcacagtcccctacc
cagttcagagacttgtgcttccaattgatttcactctactgtcaccgcacaattccacta
gaaaagttgatcaatcccttgagccacacgtggaacgtgtgcgaaaatgtactgtcgtgg
ttactgtggcaacagcttcaagccttgggttattcgcatctttcagaaacggccgctgcc
cagttaactactgcgtttgcttcccagttagaaaattgtggtctgtggcattgggccatc
tttgttgccatgcatcttaagtcgacgccttctttcattcaatcgtttgtggaagacatt
ctcgtgcgccatatcggccaagaaaaggatgaaaagtgcgagcgtttcctcgtggaaaag
cttggcatcccacagcagtggatcgaaaaatctcgagctgttagagcgctttattcgttt
tgcccgagacttcaagccacgtctctccttgctgccggactttacaatcaagcccatgat
gtcatctgtgatgaacttgcacctgaagccattttgtcggaatcctaccaggaactggag
gaactcttggctcccttagctgatcctgaacgttccagtatgattgccgattggtaccta
aagggcaaagtctattggaattacatcaccgtggtcaaagcagtagatcgaattttaaag
caggataattccaacgagaaaggaatgcaattagaaaaattaacaccggacttgacctcg
ctgtgtaacttggtatcctccctacccgtacctaccgccaaacacaggctagttcgcacg
gaaatcgctcaaaaagcggcatacattttgaaaaacgtcatcgggctacagtccgtcaac
gcatccgaagaaattgtggttccccctcgttttgtcctaccacagctccgtcagctccct
gtgacgcaggattattcgctgtctgagcttaacaacgttgttcgggcgtactttctagaa
ctcaaggtttaa
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