Daphnia magna (water flea): 116936635
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Entry
116936635 CDS
T07514
Name
(RefSeq) exosome complex component RRP46
KO
K12590
exosome complex component RRP46
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116936635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116936635
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
116936635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
Motif
Other DBs
NCBI-GeneID:
116936635
NCBI-ProteinID:
XP_032799735
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All DBs
Position
LG1:complement(16549962..16551061)
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AA seq
218 aa
AA seq
DB search
METEQKSIRALKCEQSVLSRADGSVMFSQGNTVVMASVYGPLEAKIQKELSDRMYVEVNY
KPKIGMPGVAERGKEKLVKTTCNHIILTNLHPRTAVCITIQEMQDGGTLLSASINAVCLA
LLDSGLPLQCLVAAVTCLVDKKDKIVLDPCIRTVKEGYKAMFTFAFDSQKYNLILSHCEG
QVPYTLFQEAMELCQKASHIIFDFYRQAVLRKFSKELL
NT seq
657 nt
NT seq
+upstream
nt +downstream
nt
atggaaactgaacagaaaagcattcgcgccttaaagtgtgaacagagcgttttgtcacgt
gcagatggttctgttatgttttcacaagggaatacagttgtaatggcttcagtgtatgga
ccactggaagctaaaattcaaaaggaactgtctgatagaatgtatgttgaagtgaactat
aagccaaaaataggaatgccaggtgttgctgaacgtggaaaggaaaaacttgtaaaaact
acatgcaatcatattatcttgacaaacttgcatccgagaacagctgtttgtataactatc
caagaaatgcaagatgggggaactttattgtcagcatccatcaatgcggtatgcctggcc
ctactcgactcaggtcttcctttgcagtgtcttgtagcagcagtaacttgtttggtggat
aaaaaggacaaaattgttcttgatccatgtatccgcacagttaaagaaggctataaagct
atgtttacttttgcttttgacagtcaaaaatataaccttattttgagccattgtgaaggc
caagttccatacacactttttcaagaagctatggaactctgccaaaaagccagtcacatc
atctttgacttttaccggcaagcagtactacgaaagttctcaaaagaattgttgtga
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