Desulfitobacterium metallireducens: DESME_13995
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Entry
DESME_13995 CDS
T03599
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dmt
Desulfitobacterium metallireducens
Pathway
dmt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DESME_13995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmt03019
]
DESME_13995
03009 Ribosome biogenesis [BR:
dmt03009
]
DESME_13995
Enzymes [BR:
dmt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DESME_13995
Messenger RNA biogenesis [BR:
dmt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DESME_13995
Ribosome biogenesis [BR:
dmt03009
]
Prokaryotic type
rRNA helicases
DESME_13995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_19
AAA_22
NDK
DUF4422
Motif
Other DBs
NCBI-ProteinID:
AHF08018
UniProt:
W0EER1
LinkDB
All DBs
Position
complement(2760889..2762382)
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AA seq
497 aa
AA seq
DB search
MALFRELGMSEQVLHSVENMGFEEATPIQEQTIPKALEGKDLIGQAQTGTGKTAAFGIPL
VEKIEAGAEQLQGIVLSPTRELAVQVAEELNKIGQFKGIQTLPIYGGQEIDRQIRALKKR
PQIIVATPGRLMDHMRRKTIRLSEIKIVVLDEADEMLNMGFVEDIHTILQEVPENRQTLL
FSATMPRSIQNLAQRFMKEPELISVKAKEVTVANIEQHYLEVQEKQKFDVLCRLLDMQSP
ELAIVFGRTKRRVDELAEGLNKRGYSAEGIHGDLTQSKRDSVLRQFKEGTIEILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGLAVTFVTPREIGQLRMIEQLTK
RKMIRKPIPTLVEAIEGQQRITMEKLMRVIDEEDLSPYKGLATDLLEETDSVTLLAAALK
MLTKEPDAVEVHLTDVAPLRSKGAHRGPFDQRGYRGNDRGRGSNNRGSGNDRGGFGKDRG
RRDNKRSGWNPSSFPKE
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggctttatttcgtgaattaggtatgagtgaacaagtgcttcactccgtggaaaatatg
ggatttgaagaggcaactccgattcaagaacaaacaattcccaaagctcttgagggaaaa
gatctgatcgggcaagcacagaccgggacaggcaagacagcagcctttggcatacctttg
gtggagaaaatagaggctggtgcagaacagcttcaaggtattgttctgtctccaactcgt
gaactggctgtgcaggttgcggaggaactcaataagattggacaatttaaaggaattcaa
accttgcctatctatggagggcaagagatcgaccgtcagattcgggcgttaaagaaaaga
ccgcaaattattgtggctacaccgggccgtttgatggatcatatgagacgaaaaacaatt
cgcttgagcgaaatcaagattgtcgtcttagatgaggcggatgaaatgctgaatatgggc
tttgttgaagatattcatacgatcttacaagaagtcccggaaaaccgtcagacattgctt
ttttcggcgacgatgccgagaagcattcagaatctcgcccaacgctttatgaaagaaccg
gagcttattagtgttaaagcaaaagaagtgacggtggctaatattgagcaacactatctt
gaagtgcaagaaaaacaaaaattcgatgtcctttgtcggcttttagatatgcagtctcca
gagctcgcgattgtgtttggtcggacgaagcgacgggttgatgaacttgcggaagggtta
aataaacgaggctattcggcggaaggcattcatggcgatttgacgcagagtaaacgggat
agcgtattacgtcagttcaaagaaggaacgattgagatcttagtggctacggatgtggca
gcacggggtttggatattagtggggtaacccatgtttataatttcgatattccccaagat
ccagagagctatgttcaccgaatcggacgaacaggtcgtgcaggtaaaaccggattagcg
gtaaccttcgtgactcctcgtgagattggacaattacgcatgattgaacagctcacgaaa
cggaagatgatccgtaaacccattccgaccttggttgaagcgatcgaaggacagcaacgg
attacgatggagaagttaatgcgtgttattgacgaagaagaccttagcccttataaagga
ttagcaacagatctgctggaagaaacggactcggtgactttgttagctgcagcgcttaag
atgttaacgaaggaaccggatgcagtagaagtccacctaacggatgttgctccgcttcgt
tcaaagggggctcatcgagggccttttgatcaaagagggtatcgaggaaatgatcggggt
cgtggtagtaataaccgaggctctggaaacgatcgtgggggttttggtaaagaccgtggg
agacgggataataaacggagcggttggaatccaagttcttttccaaaagaataa
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