Dehalococcoides mccartyi CG4: X793_02650
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Entry
X793_02650 CDS
T03648
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dmy
Dehalococcoides mccartyi CG4
Pathway
dmy03030
DNA replication
dmy03410
Base excision repair
dmy03420
Nucleotide excision repair
dmy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
X793_02650
03410 Base excision repair
X793_02650
03420 Nucleotide excision repair
X793_02650
03430 Mismatch repair
X793_02650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dmy03032
]
X793_02650
03400 DNA repair and recombination proteins [BR:
dmy03400
]
X793_02650
Enzymes [BR:
dmy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
X793_02650
DNA replication proteins [BR:
dmy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
X793_02650
DNA repair and recombination proteins [BR:
dmy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
X793_02650
NER (nucleotide excision repair)
GGR (global genome repair) factors
X793_02650
MMR (mismatch excision repair)
DNA ligase
X793_02650
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
X793_02650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_pol_A_CTD
5_3_exonuc
BRCT_2
zf-RRN7
PP_kinase_C_1
Motif
Other DBs
NCBI-ProteinID:
AII59276
LinkDB
All DBs
Position
complement(495777..497810)
Genome browser
AA seq
677 aa
AA seq
DB search
MFSPQTEIENLRREINRHNQLYYVQDNPEISDSEYDALLRRLKELEEAHPELVTADSPTQ
RVGAEPLKAFGIVNHPYPLLSLANAFSDTELEAWYLRVKKLLGNAAFQIDCEPKMDGLAV
ALTYRNGKFTTGATRGDGFQGENITRNLRTIHSIPLNTEEDAPPVFEIRGEVYLPKEGFA
KLNRERADKGLSLFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYAEDSLLPDSHWQI
LEYFSRRGFRINPRNRLVNTLEEAKEYYREMAENRDSLPYEADGVVFKVDSVSLQQKLGD
AGREPRWAIAYKFPAEQVTTRLKKIGISVGRTGTLNPYAILEPVNVGGVVVKQASLHNED
DILRKDIREGDTVVIQRAGEVIPEVVAPVLAKRSPESKPFSMEETLFNPKLSRPACPVCG
GEIYRPEGEAMHYCANVSCPAQFERQLEHFVSRGAMDIRGIGESLSVILAQEGLVKNVSD
LYYLTAADLLKLPRMGEKSADNIIKAIADSKSRPLDRVIFGLGIRHVGNETAALLSSRYG
DIWALAGAGLDELQTIPDIGAKIASSIKAYFSEEKNIAVIRRLETAGVKLASDQKPSHKP
LPLSGVEFVVTGKLDSLSREEAQQKIRALGGTAKDNVTKATRYLVVGADAGSKLAKARSM
GVKELSEQKFINMLEQS
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgttttccccccaaactgaaatagaaaacctgaggcgcgagataaaccgccataaccag
ctgtattacgttcaggacaaccctgaaatatctgattccgagtatgacgccttgctccgc
cgcttaaaagagctggaggaagcccaccctgagcttgttacggcggactcacccacccaa
agagtgggggctgagccgctaaaggcattcggcattgtcaatcacccttatccgctgctt
tctctggcaaatgccttttcagatacggaactggaagcctggtacctgcgggtaaagaaa
ctgctggggaatgccgcttttcagatagactgcgaacccaaaatggacgggctggcagtt
gcactgacctaccgaaacggcaagtttaccaccggcgctacccggggtgacggctttcag
ggtgaaaatattacccgaaacctgagaactatccattctatacccttaaataccgaggaa
gatgccccccctgtttttgaaataaggggtgaagtgtatcttccaaaagaaggcttcgcc
aagctcaaccgtgaaagggctgataaagggctatccctttttgccaacccccgcaatgcc
gccgccggttcgctccgccagcttgacccgtcagtaacggccgaaagaccgctggatata
tttatttatgctctggggtatgcggaagacagcctgctgcctgacagccactggcagata
ctggagtacttcagccgccggggtttcaggataaacccgcgtaaccgtctggtaaacacc
ctggaagaagccaaagaatactaccgtgagatggcggaaaaccgggattccctgccctac
gaagcagacggggtagtcttcaaggtagattcggtatccctgcagcaaaaactgggggat
gcgggacgtgaaccccgctgggctatcgcctataaatttccggccgaacaggtcactacc
cgccttaaaaaaataggcatatcggtaggccgtaccggcactttaaacccgtatgctatc
cttgaaccggtaaatgtaggcggggtagtggtaaaacaggccagtttgcataacgaagat
gatatcctccgcaaggatatccgtgaaggggatacggtagtaatccagcgggcgggggaa
gtaatacctgaggtagttgccccggtgctggctaaacgcagccccgaatcaaaacccttc
agcatggaggaaaccctgtttaaccccaaacttagccgcccggcctgcccggtgtgcgga
ggggaaatataccgccctgaaggtgaggctatgcactactgtgccaacgtttcctgcccc
gcccagtttgaacgccagctggaacactttgtctccagaggggctatggatatccgcggc
atcggcgaaagcctgagcgtgatactggcacaagagggattggtcaaaaacgtatctgac
ctttactacctgactgcggctgatttactgaaactgccgcgcatgggtgaaaaaagtgcg
gataatataataaaagctatcgcagacagcaaaagccgcccgctggacagggtaatattc
gggctgggtatccgccacgtggggaatgagacagccgctttgctatccagccgctacggt
gatatatgggcactggctggtgcaggtcttgatgaactgcaaactataccggatataggt
gccaagatagccagcagcataaaagcctatttcagcgaagaaaaaaacatagcggtcatc
cgccgtttggaaacagccggagtaaagcttgcttcagaccaaaagccctcacacaaacct
ctgccgctttccggagtggagtttgtagttaccggcaaactggatagtttaagccgcgaa
gaagcacagcaaaaaatccgcgcacttggcggcacagccaaggacaatgtcaccaaagca
acccgctatctggtggtaggtgctgatgccggctccaaactggccaaagcccgcagtatg
ggggtaaaagagctgtccgaacagaaatttataaatatgctggagcaatcttga
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