Desulfosporosinus orientis: Desor_2615
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Entry
Desor_2615 CDS
T01675
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dor
Desulfosporosinus orientis
Pathway
dor03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Desor_2615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dor03400
]
Desor_2615
Enzymes [BR:
dor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Desor_2615
DNA repair and recombination proteins [BR:
dor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Desor_2615
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AET68164
UniProt:
G7W6F7
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All DBs
Position
2698320..2700761
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AA seq
813 aa
AA seq
DB search
MTVKLREYNEKRNFSRTLEPEGIPENPKEGLRFVVQHHIARRDHYDLRLEWDGALLSWAV
PKGPSYNTRDKRLAVEVEDHPLEYRNFEGTIPKGEYGGGVVMLWDEGMWEPYVDVGEGLR
SGVLKFILKGRRLKGKWALVRLKRKAGETQDNWLLLKEKDEYANPEDGISEFTTSIRTGR
TMREIEEGEDEKITQNPFSSTVVQLAKLVSTIPKGEDWLYELKYDGYRILAYIEGNSVRL
ITRNGHDFTQRFQDVAYSLVDWAGGRAMILDGEMTITDAAGKTDFQALQNYMKNPQAQNL
TYIIFDLLALDGGDLRGQPLIDRKTTLAALLEDAPQNLYYSRHIPGKGKESFTAACEAGM
EGIVGKKAASVYSGTRNGDWIKLKCEHRQEFVVGGYTLSNRKTRGISSLILGVYSGGELV
YAGRVGTGLSEADMRELAEIFANLKRKVPPFRMAPRPKSNEQITWLEPELVAEIKFAEWT
SDNLLRQASFKGLRRDKNPRDIKKEIEEEETLSPSFPKEEARPMKARDKSLIIEGIKISN
PDKVIFAEPEITKRDVIRYYEKVAERMLPYVSHRVLSIVRCPKGISQTCFYKKHPGPGSR
GIVTIPVSSSDGETNDYFYIENSKGLIYEAQMGTLEFHIWGSRVDELEKPDLMVFDLDPD
EGMDLSRVRQGVRDMRDILAELSLNSYLKTSGGKGYHVVVPLKPVVSWDVFYDFAKRVAQ
VMEQKWPDRYTSNVRKAKRTNKIFIDWIRNGRGATSIAPYSLRARKGAGVSMPIDWDELD
RVAPGGVDMAEALRRIGCHDPWQDFFRNHQRLK
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaaactcagggagtacaacgaaaaaagaaatttctccagaaccctggagccg
gaaggcataccggaaaaccctaaagaagggctgaggtttgtagtccagcaccatatagcc
cgcagggatcactacgatctccgtctggagtgggacggggccttattgagctgggccgtg
cctaaaggcccctcctataatacccgggacaagaggctggccgtagaggtggaggatcat
cccctggaatacaggaactttgaggggacaattcccaaaggggaatatggcggcggtgtg
gtcatgctctgggatgaaggcatgtgggaaccctacgtggatgtaggggagggactccgc
tcaggtgtgctgaaatttatcctcaagggacggcggcttaaaggcaagtgggctctggtg
cgtttgaaaagaaaagcgggggagacccaggataactggctgctgctgaaagaaaaagat
gagtatgccaatcccgaagacggaatttccgagtttactaccagcatccgaacgggacgc
accatgagggaaattgaagaaggggaagacgaaaagataacccagaaccctttcagcagt
acggttgtgcagctggccaaactggttagtacaattccaaagggtgaggattggctctat
gagctgaaatacgatggctacaggatactggcctatatcgaaggcaatagcgtcaggctg
atcaccaggaacggccatgattttacccagcggttccaggatgtggcttattccctggtg
gattgggctgggggcagggcaatgattctggacggggagatgaccatcacggatgctgcg
gggaagacggattttcaggcactgcagaattatatgaaaaatccccaggcccaaaacctg
acctatattatctttgatcttctggccttggatggaggggatctccggggacagcccctc
attgacaggaagacaaccttggcagccttgctggaggatgcccctcaaaatctctactac
agccggcatattccagggaagggcaaagaaagtttcactgcggcttgtgaggcgggcatg
gaagggatcgtgggcaaaaaagccgcttccgtctacagcggaaccagaaacggtgactgg
attaaacttaaatgcgagcataggcaggaattcgtggtaggaggctatactctttctaat
cgaaaaaccagggggataagttctctgatcctgggggtctattccggtggggaattagtc
tatgccggacgggtcggcaccgggctgagcgaagctgacatgagagagctggcggaaatc
tttgcgaacctcaagagaaaggtcccccctttccggatggcgcctagacctaagtccaat
gagcagatcacttggctggaaccggaactggtggcggaaataaaatttgccgaatggacg
tcagacaatctattaaggcaggccagttttaaaggcctgcgcagggataagaatcccagg
gatattaaaaaggaaatagaggaggaggaaaccctgtcaccttcatttcctaaagaagag
gcgaggcctatgaaggcccgggacaaaagtctcattatcgaaggaatcaagatcagcaac
cccgacaaggtgatttttgctgagcctgaaatcaccaaaagggatgtgatccgctattac
gaaaaggtggcggaacgcatgctgccttatgtgagccatcgggttctcagtattgtccgc
tgtcccaaaggcatctctcagacctgcttctataaaaagcatcccggtccgggcagtcgg
ggaatcgtcactattcctgtctcctccagtgacggggagacgaatgactacttttatatt
gagaattcaaaggggctgatctacgaagcccaaatgggcaccctggaatttcatatctgg
ggaagtcgtgtggatgagctggaaaagccggatctcatggtctttgatctggaccctgat
gaggggatggatctaagcagggtgcgccagggtgtgcgggatatgagggatattctggcc
gagctatccctgaattcctaccttaagaccagcggcggcaaagggtaccatgtggttgtg
cctttaaagcctgtcgtttcctgggatgttttttatgattttgctaaacgggttgcccaa
gtgatggagcagaagtggccggaccgctacaccagcaatgtgcgcaaggccaagcgcacc
aacaagattttcatcgattggattcgcaatggcagaggcgctaccagcattgccccttat
tccctgcgagcgagaaaaggggcgggagtgtccatgcccatagattgggatgagctagac
agggtggctcccggaggcgtagacatggcggaggccctccggaggatcggatgccatgat
ccctggcaggattttttccggaatcaccaacggcttaaatga
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