Dipodomys ordii (Ord's kangaroo rat): 105986355
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Entry
105986355 CDS
T07834
Symbol
Col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
105986355 (Col13a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dord00536
]
105986355 (Col13a1)
Glycosaminoglycan binding proteins [BR:
dord00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105986355 (Col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
105986355
NCBI-ProteinID:
XP_012872688
UniProt:
A0A1S3F7Q2
LinkDB
All DBs
Position
Unknown
AA seq
654 aa
AA seq
DB search
METAILGRVNQLLDEKWKLHSRRRREAPKMSPGCNCPPGPPGPTGRPGLPGNKGSIGMPG
RVGVKGQPGEKGAPGDAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGEPGL
AGPRGLPGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQGQAGVQGPPG
PPGPPGPSGPLGHPGLPGPMGPPGLPGPPGQKGDPGIQGYHGRKGERGMPGMPGKHGAKG
APGIAVAGMKGEPGTPGSKGEKGASGPPGLSGLLGQKGEKGDAGNSIGGSRGEPGPPGLP
GPPGPKGEAGEAGHAGPPGRQGDKGHPGAAGEQGPAGPKGSKGEPGKGEMVDYNGNISEA
LQEIRTLALMGPPGLPGQIGPPGAPGSPGQKGEIGLPGPPGHDGEKGPRGKPGDLGPAGP
QGPPGKDGPPGMKGETGHPGNPGEKGEKGEMGHAGSPGLDGPTGEKGEPGDQGRPGATGL
PGPIGLPGFTGEKGEAGEKGDPGAEVPGPPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEK
GVQGEKGDRGPLGLPGASGLDGRPGPPGTPGPVGVPGPAGPKGERGSKGDPGMTGPTGAA
GLPGLHGPPGDKGNRGHRGFKGEKGEPGLPGLDGLDAPCPLGEDGLPVQGCWNK
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggagacggctattttgggacgagtcaaccaactgctggacgagaaatggaagctccac
tcacgcagacgcagggaagccccgaagatgtctccaggatgtaactgcccaccaggacct
cctggtcccactggaagacctggactcccagggaacaaaggctccattggaatgcctggg
cgtgtgggagtcaagggtcaaccaggcgagaagggtgcccctggtgatgccggcatgtcc
atcattggtccccgaggcccccctggccaaccaggcactcgaggcttccctgggtttccg
ggtcccattggcctggatggcaaaccgggccaccctggaccaaaaggggaaccgggcctg
gcgggaccccgaggactgccgggccctcaaggacagaaaggagaaaagggtcagtgtggc
gagtatcctcatcggctgctgcctcttctcaattcagtgcgtctggctcctcccccagtc
attaaaaggaggaccttccagggtgagcagggtcaggctggtgtccaaggaccaccaggg
cccccaggcccccctggaccaagtggacctctggggcacccaggactgccgggacccatg
gggccacccggcttacctgggcctcctggacagaagggagacccagggatccaaggctac
catggccgcaagggggagcggggcatgccagggatgccaggcaaacatggagccaagggg
gcgcctgggatcgctgtggctgggatgaagggtgagccaggaactccaggatccaagggt
gagaagggcgcttctggccctcctgggctctctgggctcctgggacagaagggagagaaa
ggtgatgctggcaactccattggaggaagcagaggggaacccggtcccccaggactccct
gggcccccagggccaaagggagaagccggtgaggctggccacgccgggcccccaggacga
caaggagacaaggggcatccaggagcagctggagagcagggaccagctggccccaagggc
tccaagggagaacctggaaaaggagagatggtggactacaacggaaatatcagtgaggct
cttcaggagatccgaacactggccttgatggggcctcccggccttccaggacaaataggc
ccacccggagctccagggagtccaggccagaagggggagattggactacctggccctcca
ggacatgatggggaaaagggacctcgaggcaagccaggggatctgggtcctgcgggtccc
caaggacccccaggaaaggatgggcctccaggaatgaagggagaaactggacacccaggg
aaccccggagagaagggagagaaaggggagatgggacacgcaggctcaccgggtctagac
ggcccaactggggagaaaggagaaccaggtgaccaagggaggcccggagctacaggattg
cctggcccaattgggctcccgggatttacaggagaaaaaggagaagctggagaaaagggc
gatccaggagcagaggttcctgggccaccaggaccagagggacctcctggacctccgggc
ctccaaggtgttcctggaccaaagggggaagcaggcctagatggagcaaaaggagagaag
ggtgtccagggagaaaaaggagaccgaggacctctgggattaccgggagcttcaggtttg
gacggcaggcctgggccaccgggtactccaggaccagtcggagttccaggcccagcagga
ccaaagggcgagaggggcagcaaaggagatccagggatgacaggaccaacgggagcagct
ggacttcctggtttacatggaccacccggggacaaaggaaaccggggacatcgaggtttt
aaaggagagaaaggggagccggggttaccagggctggacggactggatgccccatgcccg
ttgggtgaagatggcttaccagtccagggctgctggaacaagtga
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