KEGG   Dipodomys ordii (Ord's kangaroo rat): 105986355
Entry
105986355         CDS       T07834                                 
Symbol
Col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain
  KO
K16617  collagen type XIII alpha
Organism
dord  Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:dord00001]
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    105986355 (Col13a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:dord00536]
    105986355 (Col13a1)
Glycosaminoglycan binding proteins [BR:dord00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   105986355 (Col13a1)
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 105986355
NCBI-ProteinID: XP_012872688
UniProt: A0A1S3F7Q2
LinkDB
Position
Unknown
AA seq 654 aa
METAILGRVNQLLDEKWKLHSRRRREAPKMSPGCNCPPGPPGPTGRPGLPGNKGSIGMPG
RVGVKGQPGEKGAPGDAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGEPGL
AGPRGLPGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQGQAGVQGPPG
PPGPPGPSGPLGHPGLPGPMGPPGLPGPPGQKGDPGIQGYHGRKGERGMPGMPGKHGAKG
APGIAVAGMKGEPGTPGSKGEKGASGPPGLSGLLGQKGEKGDAGNSIGGSRGEPGPPGLP
GPPGPKGEAGEAGHAGPPGRQGDKGHPGAAGEQGPAGPKGSKGEPGKGEMVDYNGNISEA
LQEIRTLALMGPPGLPGQIGPPGAPGSPGQKGEIGLPGPPGHDGEKGPRGKPGDLGPAGP
QGPPGKDGPPGMKGETGHPGNPGEKGEKGEMGHAGSPGLDGPTGEKGEPGDQGRPGATGL
PGPIGLPGFTGEKGEAGEKGDPGAEVPGPPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEK
GVQGEKGDRGPLGLPGASGLDGRPGPPGTPGPVGVPGPAGPKGERGSKGDPGMTGPTGAA
GLPGLHGPPGDKGNRGHRGFKGEKGEPGLPGLDGLDAPCPLGEDGLPVQGCWNK
NT seq 1965 nt   +upstreamnt  +downstreamnt
atggagacggctattttgggacgagtcaaccaactgctggacgagaaatggaagctccac
tcacgcagacgcagggaagccccgaagatgtctccaggatgtaactgcccaccaggacct
cctggtcccactggaagacctggactcccagggaacaaaggctccattggaatgcctggg
cgtgtgggagtcaagggtcaaccaggcgagaagggtgcccctggtgatgccggcatgtcc
atcattggtccccgaggcccccctggccaaccaggcactcgaggcttccctgggtttccg
ggtcccattggcctggatggcaaaccgggccaccctggaccaaaaggggaaccgggcctg
gcgggaccccgaggactgccgggccctcaaggacagaaaggagaaaagggtcagtgtggc
gagtatcctcatcggctgctgcctcttctcaattcagtgcgtctggctcctcccccagtc
attaaaaggaggaccttccagggtgagcagggtcaggctggtgtccaaggaccaccaggg
cccccaggcccccctggaccaagtggacctctggggcacccaggactgccgggacccatg
gggccacccggcttacctgggcctcctggacagaagggagacccagggatccaaggctac
catggccgcaagggggagcggggcatgccagggatgccaggcaaacatggagccaagggg
gcgcctgggatcgctgtggctgggatgaagggtgagccaggaactccaggatccaagggt
gagaagggcgcttctggccctcctgggctctctgggctcctgggacagaagggagagaaa
ggtgatgctggcaactccattggaggaagcagaggggaacccggtcccccaggactccct
gggcccccagggccaaagggagaagccggtgaggctggccacgccgggcccccaggacga
caaggagacaaggggcatccaggagcagctggagagcagggaccagctggccccaagggc
tccaagggagaacctggaaaaggagagatggtggactacaacggaaatatcagtgaggct
cttcaggagatccgaacactggccttgatggggcctcccggccttccaggacaaataggc
ccacccggagctccagggagtccaggccagaagggggagattggactacctggccctcca
ggacatgatggggaaaagggacctcgaggcaagccaggggatctgggtcctgcgggtccc
caaggacccccaggaaaggatgggcctccaggaatgaagggagaaactggacacccaggg
aaccccggagagaagggagagaaaggggagatgggacacgcaggctcaccgggtctagac
ggcccaactggggagaaaggagaaccaggtgaccaagggaggcccggagctacaggattg
cctggcccaattgggctcccgggatttacaggagaaaaaggagaagctggagaaaagggc
gatccaggagcagaggttcctgggccaccaggaccagagggacctcctggacctccgggc
ctccaaggtgttcctggaccaaagggggaagcaggcctagatggagcaaaaggagagaag
ggtgtccagggagaaaaaggagaccgaggacctctgggattaccgggagcttcaggtttg
gacggcaggcctgggccaccgggtactccaggaccagtcggagttccaggcccagcagga
ccaaagggcgagaggggcagcaaaggagatccagggatgacaggaccaacgggagcagct
ggacttcctggtttacatggaccacccggggacaaaggaaaccggggacatcgaggtttt
aaaggagagaaaggggagccggggttaccagggctggacggactggatgccccatgcccg
ttgggtgaagatggcttaccagtccagggctgctggaacaagtga

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