Oryza sativa japonica (Japanese rice) (RAPDB): Os03t0743800-00
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Entry
Os03t0743800-00 CDS
T02163
Symbol
Os03g0743800
Name
(RAP-DB) Similar to predicted protein.
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Os03t0743800-00 (Os03g0743800)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dosa03041
]
Os03t0743800-00 (Os03g0743800)
Enzymes [BR:
dosa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Os03t0743800-00 (Os03g0743800)
Spliceosome [BR:
dosa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
Os03t0743800-00 (Os03g0743800)
Complex C
U5 SnRNP specific factors
Os03t0743800-00 (Os03g0743800)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_30
AAA_22
AAA_25
AAA_11
Motif
Other DBs
RAP-DB:
Os03t0743800-00
LinkDB
All DBs
Position
chr03:join(30523073..30523777,30523899..30525081,30525152..30526143,30527447..30527836,30527934..30531098)
AA seq
2144 aa
AA seq
DB search
MAKPGSGGGAEAHARSRKYDYVENSNLVLGSGSGSRPRGGADEHTGEPETLRGRIDPRSF
GDRAVQAKPPVEPPRRRKARDAADHDIGHRLDAKRRRRAASACTAQREVSVLTLIDDVVY
RPRTKETRAAYEALLSVIQRQLGGQPPDVLGSAADEVLAILNNDKIKSPEKKRGIDKFLD
PISDQMFHQFVSIGKLITDFHDTAVCDSASELDENFGVAVEFEQNEDDEGSDSDQVLDDL
DEDDGDTMLNAAGAMQIGDELDDDDMHNSNEELAINAQDIDAYWLQRKVSQAYEDIDPQV
SQELSLEIMSFLSESDDKDVENRLVTLLGYDNFDFIKLLVRNRLKIFWCTCLARAEGQEK
RKMIEENMLSDPTLSPILEQLHATRVSAKDRLKNMEKSIRDEAKRLTEKQNAGINGARDQ
RVVKRDMESGWLKGQKQLLDLENLTFHQGGLLMVNKKCELPPGSFRTPHNGYEEVHVPAL
KAKPYENGEKVVKISDMPDWAQPAFAGMTQLNRIQSKVYDTALFKPDNIILCAPTGAGKT
NVAVLTILQQIGLHMKDGEFDNTKYKIVYVAPMKALVAEVVGNLSARLKEYNITVRELSG
DQNLTKQQIDETQIIVTTPEKWDIVTRKSEGLFWRALFRSVRQTETTKEHIRLVGLSATL
PNYQDVAVFLRVHSGGLFHFDNSYRPCPLAQQYIGITVKKPFQRFQLMNQICYEKVMAAA
GKHQVLIFVHSRKETAKTARAIKDIALSNNKLTCFPKVESASLEILADHANHVKSNDLKD
LLPYGFGIHHAGLTRVDRELIEGLFADKHLQALVSTATLAWGVNLPAHTVIIKGTQVYNP
EKGAWTELSPLDVMQMLGRAGRPQYDTHGEGIILTEQSELQYYLSLMNQQLPIESQFISR
LADHLNAEIVLGTIQNVREACTWLGYTYLYIRMLRNPTLYGLPADIMETDNTLDERRVDL
VHAAANILDWNNLIKYDRKTGYFQVTDLGRIASYYYVSHRTISTYNECLKPTMGDIELCR
LFSLSEEFKYVSVRQDEKMELAKLFNCVPIPVKESLDEPSAKINVLLQAYISRLELEGLS
LSSDMVYIRQNAGRLLRALFEIVLKRGWAQLAEKALNLCKMIDKHIWNVQIPLHQFPSIP
KEILMKLEKKELAWERYFDLSSQEIGELIRNPKMGMQLHKCIHQLPKLNLSAHVQPITPT
VLGFELTITADFQWDDELHGYVEPFWLIVEDNGGDNILHHEYFMLKKQYVDEDHTLNFTV
PIYEPLPPQYFIRVVSDKWLGSQTILPVSFRHLTLPEKYAPPTELIDLQPLPVTALRNAR
YESLYCAFKHFNPIQTQVFTASYNSDDSVLVAAPTGSGKTICAEFAILRNHQKAVSGDSN
MRVVYVAPIEALAKERYKDWESKFGELARVVELTGETAADLKLLDKGEIIISTAEKWDAL
SRRWKQRKNVQQVSLFIFDELHLIGSENGHILEIIISRMRHMANHIGSNIRIVALSASLA
NGKDLGEWIGTSSHSLFNFPPAVRPLPLEIHIQGWDVAIFEARMQAMSKPTYTAITQHAK
HGKPALVFVPTHKHARLTAVDLCAHSSAESGGTPFLLGSEDEMDTFTSGVNDEALKYTLK
CGVGYLHEGLSDFDQELVTQLFLGGRIQVCVASSKMCWGRSLPSHLVVVMGTQYYDGRGN
SHTDYPVTDLLQMMGHANRPLQDDSGKCVILCYAPRKEYYKKFLFEAFPVESHLQHFLHD
HMNAEVVAGLIENKQDAVDYLTWTFMYRRLAKNPNYYNLQDVSHRHVSEHLSELVETVLN
DLESTNCLAIEENIYLKTLNLGLIASYYYVTYTTIERFSSMLTQKTKLKGLLEILASASE
YADLPSRPGEQKSIERLVHHQRFSVEKKVRYDDPHVKANALLQCHFSRRTVEGDLAADQR
EILLPAHRLLQALIDVISSNGWLTLALNAMELSQMVTQGMWDRDSVLLQLPHFTEELARR
CQENEGKAIETIFDLAEMSTHEMQDLLQLPSSQLQDIVGFLRRFPNIDMAFQVLEGDGGS
VTVQVTLEREMADLLQSEAGPVHAPRFPKPKEEGWWLVIGDRSTDQLLAIKRVKLQKRAR
VKLEFAAPAEAGRKDYMVYLMSDSYLGCDQEYEFAVDVKDAGGD
NT seq
6435 nt
NT seq
+upstream
nt +downstream
nt
atggccaagccgggtagcggcggtggcgccgaggcgcacgcgcgttcgaggaagtacgac
tacgtcgagaactcgaacctcgtgctcggctccggctccggctcgcgcccccgtggcggc
gcggacgagcacaccggcgagcccgagacgctccggggcaggatcgacccgaggagcttc
ggcgaccgcgccgtccaggccaagccccccgtcgagccgccgcgcaggaggaaggcgcgc
gacgccgcggaccacgacatcggccaccgcctcgacgccaagcgcaggcgccgcgccgcc
tccgcctgtaccgcgcagcgcgaggtcagcgtgctcacgctcatcgacgacgtcgtgtac
aggccccggaccaaggagacgcgagccgcctacgaggccctgctcagcgtcatccagcgg
cagctcggcggccagcctcctgacgtgcttggcagcgccgccgacgaggtgcttgccatc
ctcaacaatgacaagatcaagagccctgagaagaagagggggatcgacaagttcctcgac
cccatctccgaccagatgttccaccagttcgtctccatcggtaagctcatcacagatttt
catgatactgcagtttgtgattcagctagtgaactggatgaaaatttcggcgttgctgtt
gagtttgaacagaacgaagacgatgagggaagtgattctgatcaggtactagatgatttg
gatgaggacgacggcgacaccatgctgaatgctgctggtgccatgcaaattggtgatgag
ttagacgatgatgatatgcataactccaatgaggagctggccataaacgcacaagacatt
gatgcttactggcttcagaggaaggtatcacaggcatatgaagatattgatccgcaggtt
agccaggagctttctttggagatcatgagttttctttctgagagtgacgacaaggatgtt
gagaatcggcttgtcacgctattgggctatgacaattttgatttcatcaaattgctggtg
cggaaccgactcaagatattctggtgtacttgtttggcaagggctgaaggtcaggaaaag
cggaagatgatagaagagaatatgctgagtgacccaacattaagtccaatattggagcag
ctgcatgcaacgagggtgtctgcaaaagataggctgaagaatatggagaaaagcatcagg
gatgaggccaagaggcttaccgaaaaacaaaatgctggcattaatggtgcgagggatcaa
agggtagttaagcgggatatggagagtggatggttgaaaggccagaagcagctgcttgat
cttgagaacctaaccttccaccaaggtggtctcttgatggttaacaagaaatgtgaactt
ccaccaggatcatttagaacccctcataacgggtatgaggaagtccatgtgccagcactg
aaagctaagccatatgaaaatggagagaaggttgtcaagatatctgatatgccagactgg
gctcaaccagcttttgctgggatgacacagctgaataggattcaaagcaaggtttatgat
actgcccttttcaaaccagataatattattctctgtgcaccaacaggtgctgggaaaacc
aacgtggctgtgcttacaatccttcagcagattggcttgcacatgaaagatggagagttt
gacaataccaaatacaaaattgtgtatgtagccccaatgaaagctttggttgctgaagtt
gttggaaatttgtcagcacggctgaaagagtacaatatcactgtaagggaactcagtgga
gaccagaacttaaccaaacaacagattgatgaaacacagattattgtcactacacctgag
aaatgggatattgtcacaagaaaatcagagggcctgttctggagagcattgtttagatca
gtcaggcagactgaaacaaccaaggaacatatccgtctagttggtctctcagcaactctt
ccaaactatcaagatgttgcagttttcttgcgtgttcactctggtggtctcttccatttt
gataacagctaccgaccttgccctcttgctcaacaatacattgggatcactgtgaagaag
cccttccagaggtttcagttgatgaatcagatttgctatgagaaggttatggctgctgct
ggaaagcatcaagtgcttatatttgtgcactcgaggaaggagacagccaaaactgctcgt
gccatcaaagatattgcattatctaataacaaactgacctgctttccaaaggttgagagc
gcgagcctagagattcttgccgatcatgcaaatcatgtgaaaagcaatgatcttaaagat
cttttgccgtatgggtttggtattcatcatgctgggttgacaagggtagaccgtgagctc
attgaggggctttttgctgataaacatttacaggcgctcgtttcgacagcgacccttgca
tggggtgtcaatttgcctgcgcacactgtaataataaagggtacccaggtttacaatccg
gaaaaaggtgcttggacagaactgagccctctggatgtcatgcagatgcttggtcgcgcg
ggcagacctcagtatgatacacatggagagggaataatactaactgaacaaagtgaattg
cagtactacctgtctctgatgaatcagcaactgcctattgagagtcagttcatatccaga
ttggctgatcatctgaatgctgagatcgttctggggactattcagaatgttcgggaggca
tgcacctggcttggctacacctacctctacatcaggatgctccggaatccaacgttgtac
ggtttaccagcagatattatggaaacagacaatactctagatgaaaggagagttgacttg
gtacacgctgctgcaaatatactggattggaacaatttgataaagtatgacaggaaaaca
ggatattttcaggtaactgacctgggaaggattgctagttattactatgttagtcacagg
actatctcaacatacaatgagtgcctgaagcctacaatgggtgatattgagctgtgtcga
ctcttttcactgagtgaagaatttaagtatgtcagtgttagacaggatgagaaaatggag
ttggcaaagcttttcaattgtgtgcctattcctgtgaaagagagcttggacgagcccagt
gcaaagatcaatgttctactgcaagcatatatttctaggctggaactggagggtctttcc
cttagttcagatatggtctacatcagacagaatgctggccgtctcctacgagcgctgttt
gagatagttttgaagagaggatgggcccaactagcggagaaagcgttgaatctttgcaag
atgattgataagcatatatggaacgtccaaattcccctgcaccagtttccaagtattcca
aaggaaatcttaatgaaactggagaaaaaagaattggcttgggagaggtactttgaccta
tcatcacaggaaattggtgagctaattcgtaacccgaagatggggatgcagctgcacaag
tgcatccaccaattaccaaagctgaacctttcagcccatgttcaacctattactcctacg
gttttgggttttgaactgactataacagctgatttccaatgggatgatgaattgcatgga
tatgtggagcccttctggcttattgttgaggacaacggtggcgataacattcttcaccat
gagtacttcatgcttaagaaacaatacgtggatgaagatcatacacttaacttcacagtg
ccaatatatgagccactgccccctcagtactttatacgcgtagtatctgataagtggctt
ggttctcagacaattcttcctgtcagttttaggcatttaactcttccagaaaaatatgct
ccaccaactgaattgattgatctgcagccactacctgttactgccctgagaaatgcacga
tatgaaagcctttactgtgcttttaaacatttcaaccccatccagactcaagtgttcact
gcctcgtacaacagtgatgacagcgtgttggttgcggcgccaacaggcagtggaaagacc
atatgtgcagagtttgctattctaagaaaccatcagaaggctgtatctggtgacagcaac
atgcgtgttgtgtatgtagctcctattgaagctcttgcaaaagaaagatataaggattgg
gagagcaaatttggagaattggcgcgggtagttgagctaacaggcgaaacagcagctgat
ttgaagcttcttgataaaggggagattataatcagtactgctgagaagtgggatgcactc
tcacgccgatggaaacagcgaaagaatgtgcaacaggtcagtttatttatttttgacgag
ctccatctgattggatctgaaaatgggcatattctggaaatcatcatctctaggatgagg
catatggcgaatcatattggtagtaacattcggattgtagcgctttcagcatcccttgca
aatggtaaagatcttggagaatggattggcacctcctctcatagccttttcaacttccct
ccagcagtgcgaccactgccgttagaaattcacattcagggttgggatgtagcaattttt
gaggcaaggatgcaggcaatgtcaaagccaacatacactgctataacccagcatgcaaag
catggtaagcctgccctggtgtttgtaccaacacataagcatgcaaggttgaccgcagtg
gatttgtgtgcacactcaagtgctgagagtggtggaacacctttccttcttgggtcagaa
gacgagatggatactttcactagtggtgtcaatgatgaagcacttaaatacactctgaaa
tgtggtgtaggctacttgcatgagggcctgagcgacttcgatcaggaacttgtaactcag
ctctttcttggtgggaggatccaagtgtgtgttgcaagcagcaaaatgtgctggggaaga
tcattgccctctcatctggttgttgtgatgggaacccagtattatgatggccgggggaac
agccatactgattatccagtcactgatctgttgcaaatgatgggccatgccaacaggcct
cttcaagatgactctgggaaatgtgttatattgtgctatgcgcctcgcaaggaatactac
aagaagttcctttttgaggccttccctgttgagagccatctccagcacttcttgcatgat
catatgaatgccgaggtggtagctggtcttatagaaaacaagcaagatgccgtggattat
cttacttggaccttcatgtaccgacggcttgcgaagaaccctaactactacaatctgcag
gatgtgagccacaggcatgtatcagaacatctctctgagctggttgagacagtgctgaac
gacctggaatcaaccaattgtttggctatcgaggaaaatatttacctgaagaccctcaac
cttggtctcattgcctcgtattactacgtcacctacacgactattgagcgattcagttct
atgctaactcagaagaccaagttgaaaggcctcctggagattctagcttctgcctcagaa
tatgcagatctccccagtcgccctggtgagcaaaaatccattgagaggcttgttcatcac
cagagattttctgtcgagaagaaagtcaggtatgacgatccacatgtcaaggccaacgca
ctgctgcaatgccatttctcaaggcgcacggtggaaggtgaccttgcagctgaccagcgg
gagattctccttcctgctcatagattgctccaggcactgatcgatgtcatctccagcaac
ggatggctcaccctcgctctcaacgcaatggagctgagccagatggtgacacagggcatg
tgggatcgcgattccgtgctgcttcagcttccacacttcaccgaggagttagcccggaga
tgccaggagaacgaaggcaaggccatcgagaccatcttcgatctggctgagatgagcacg
catgagatgcaggatctgctgcagctaccaagctcccagctgcaggacatcgtcggattc
ctcaggcggttcccaaacatcgacatggctttccaagttcttgaaggcgatggtggcagt
gtgaccgtgcaggtgacgctagagcgcgagatggcagacctgctgcaatctgaggctggt
ccagtccatgcccccaggttcccaaagcccaaggaagaaggatggtggctggtgattggt
gatcgctccaccgaccagttgctggcaatcaagagggtcaagctccagaagagggctcga
gtgaagctcgagttcgctgcccctgcagaagcagggagaaaagattacatggtttacttg
atgtctgattcctatctgggctgcgaccaggagtacgagttcgccgtcgatgtcaaggat
gctggaggggattga
DBGET
integrated database retrieval system
