Oryza sativa japonica (Japanese rice) (RAPDB): Os04t0390000-01
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Entry
Os04t0390000-01 CDS
T02163
Symbol
Os04g0390000
Name
(RAP-DB) Similar to OSIGBa0096P03.7 protein.
KO
K00164
2-oxoglutarate dehydrogenase E1 component [EC:
1.2.4.2
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa00020
Citrate cycle (TCA cycle)
dosa00785
Lipoic acid metabolism
dosa01100
Metabolic pathways
dosa01110
Biosynthesis of secondary metabolites
dosa01200
Carbon metabolism
dosa01210
2-Oxocarboxylic acid metabolism
Module
dosa_M00009
Citrate cycle (TCA cycle, Krebs cycle)
dosa_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
Os04t0390000-01 (Os04g0390000)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
Os04t0390000-01 (Os04g0390000)
Enzymes [BR:
dosa01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.4 With a disulfide as acceptor
1.2.4.2 oxoglutarate dehydrogenase (succinyl-transferring)
Os04t0390000-01 (Os04g0390000)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
E1_dh
OxoGdeHyase_C
Transket_pyr
2-oxogl_dehyd_N
Motif
Other DBs
RAP-DB:
Os04t0390000-01
LinkDB
All DBs
Position
chr04:join(19176476..19178011,19178407..19178633,19178721..19179053,19180025..19180271,19180899..19181027,19181110..19181325,19181399..19181522,19182000..19182238)
AA seq
1016 aa
AA seq
DB search
MGWFRAASGLARVALRRNLARAPANPFAGPAPRYFHSTRPRRFAAPVPRAVPLSRLTDSF
LDGTSSVYLEELQRAWEADPTSVDESWDNFFRNFVGQAATSPGISGQTIQESMRLLLLVR
AYQVSGHLKAKLDPLALEERPIPDVLDPAFYGFSEADLDREFFLGVWRMAGFLSENRPVQ
TLRSVLERLEQAYCGTIGYEYMHIPDREKCNWLRDRIETVNAREYSYDRRQVMLDRLMWS
TQFESFLAQKWTTAKRFGLEGAETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNV
VRKPLRQIFSEFSGGTKPAEEGEGLYTGTGDVKYHLGTSYDRPTRGGKHIHLSLVANPSH
LEAVDPVVAGKTRAKQYYSNDLDRTKNLGVLLHGDGSFSGQGVVYETLHLSALPNYTTGG
TIHIVVNNQVAFTTDPRAGRSSQYCTDVAKALDAPIFHVNGDDLEAVVHVCELAAEWRQT
FHSDVVVDIVCYRRFGHNEIDEPSFTQPKMYKIIRNHQSALEIYQNRLLESGKISKEDID
KMQKKVSTILNDEFQNSKEYIPNKRDWLSAYWTGFKSPEQISRIRNTGVKPEILKRVGEA
MTTLPENFKPHRAVKKIFELRRQMIETGEGIDWAVGEALAFATLIIEGNHVRLSGQDVER
GTFSHRHAVIHDQETGEQYCPLDNLVMNQDEELFTVSNSSLSEFAVLGFELGYSMENPNS
LVLWEAQFGDFSNGAQVIFDQFLSSGEAKWLRQTGLVVCLPHGYDGQGPEHSSARLERFL
QMSDDNPYVIPEMDPTLRKQIQQCNWQVVNVTTPANYFHVLRRQIHRDFRKPLIVMSPKN
LLRHKDCKSNLSEFDDLAGHPGFDKQGTRFKRLIKDQNNHKDLEEGIKRLVLCSGKVYYE
LDEERRKKERDDVAICRVEQLCPFPYDLIQRELKRYPNAEIVWCQEEPMNMGAYSYINPR
LLTAMRALGRGTIDDIKYVGRAPSAATATGFYSVHVQEQTELVQKALQRDPINSPF
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atggggtggtttcgggctgcgtccggattggctcgggtggcgctgaggaggaacctggcg
cgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccgcccc
cggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgacagcttc
cttgatggcaccagcagcgtgtaccttgaggagctccagagggcgtgggaggctgatccc
acctctgtcgacgagtcctgggacaatttctttcggaactttgtcgggcaggctgcaact
tcgcctggcatatctgggcagacaattcaggaaagcatgaggttgctgcttcttgtgcga
gcgtaccaggtgagtggtcacctgaaggctaagcttgatcctctcgcgctagaggagcgg
cctatccctgatgttctggaccctgcgttctatgggttctctgaggctgatctggaccgg
gagttttttcttggtgtgtggaggatggctgggttcttgtcggagaatcgccctgtgcag
acactccgttctgtgttggagcggcttgagcaagcttactgtggtaccattgggtatgag
tacatgcacatacctgacagggagaaatgtaattggctgagggataggattgagacggtc
aatgcaagggagtactcctacgaccgtcgccaggtcatgcttgataggctcatgtggagc
actcagtttgagagcttcttggcacagaaatggacgaccgccaagcggtttggtcttgaa
ggtgcggagacactgatccctggcatgaaggagatgtttgacagggcagctgatcttggt
gtagagagcattgtgattggtatgccacacagaggtaggctgaatgtcttgggaaatgtc
gtgaggaagcccttgcgacagatcttcagtgagtttagtggtggtaccaagcctgccgaa
gaaggggagggcttgtatacagggactggagatgtcaaataccatctaggaacttcatac
gataggcctaccagaggtggaaagcatatccatctgtctctggttgcaaacccaagtcat
ttggaagcagtcgatcctgttgttgctgggaagaccagagcaaaacagtactattctaat
gatcttgacaggaccaagaatttaggagtcttgttgcatggtgatggaagcttctcaggg
cagggtgtagtgtatgaaaccctgcatctcagtgctcttccaaactacactactggtggg
acaattcacattgtggtcaataatcaggttgctttcactactgatccaagggcagggagg
tcttcgcagtattgcacagatgttgctaaagcattggatgctccaattttccatgtgaat
ggtgatgacttggaggcagtggttcatgtctgtgagcttgctgcggagtggcggcaaaca
tttcattctgatgttgtggtggatattgtatgctaccgccggtttgggcataacgagatt
gatgagccttccttcacccagcctaaaatgtacaagataattaggaaccaccagagtgct
cttgagatataccaaaacagacttttagaatctgggaagatatccaaggaagatattgat
aagatgcagaagaaggtcagcactatcttgaatgatgaattccaaaacagcaaagaatat
attcccaataagagagactggctctcagcttactggactggattcaagtcaccagaacag
atttcacgaatccgaaatactggtgtcaagccagagattctaaaacgtgttggagaagcc
atgactactctgcctgaaaatttcaagccccacagggctgtcaaaaagatttttgagctg
cgtcgtcagatgattgagacgggcgaaggcattgattgggctgttggtgaagcacttgct
tttgcaactcttataattgagggaaaccatgttaggttaagtggtcaggatgttgagagg
ggtacattcagccaccgccatgctgttatccatgaccaggaaactggagagcaatactgt
ccgcttgataatcttgttatgaatcaagatgaggaactatttactgtaagcaacagttcc
ctgtcagagtttgctgttttgggctttgaattgggctattccatggagaatccaaactca
ctggttttatgggaagcccagtttggtgatttttccaatggagctcaagtgatatttgat
cagtttctgagtagtggagaggcaaaatggctccgccagaccggtcttgtcgtttgcctt
cctcacggatatgatggtcaggggcctgaacattccagtgcaaggttggagcgtttcctt
cagatgagtgatgacaacccttatgttattcctgagatggatccaactctgaggaagcaa
atccagcagtgcaactggcaagttgtgaatgtcacaactcctgcaaactatttccatgtc
ctgcgtcgccagattcaccgggacttcagaaagcctttgattgttatgtctccaaagaat
ctccttcgacacaaggactgcaaatcgaatctttctgaatttgatgaccttgctggtcac
cctggatttgacaagcaaggaacccggtttaagcgtctaattaaagatcagaacaaccat
aaggaccttgaggagggaatcaagcgtttagttctctgttctggaaaggtatattatgag
ttggacgaagaaagaagaaaaaaggagcgtgatgatgttgctatatgtagagttgaacag
ctctgtccattcccatatgacctcatccagcgcgagttgaagcgatatccaaatgccgag
attgtttggtgccaagaggaacccatgaacatgggggcgtacagctacatcaatcctcgc
ctcctgaccgcgatgagggcgcttggtcggggcacgatagacgacatcaaatacgttgga
agggccccatctgcagccaccgcaacaggtttctactccgtccatgtgcaggagcaaacc
gagcttgtgcagaaggcactgcagcgagaccctatcaactctccattttga
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