Oryza sativa japonica (Japanese rice) (RAPDB): Os05t0293500-01
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Entry
Os05t0293500-01 CDS
T02163
Symbol
Os05g0293500
Name
(RAP-DB) Similar to Pectate lyase B (Fragment).
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa00040
Pentose and glucuronate interconversions
dosa01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Os05t0293500-01 (Os05g0293500)
Enzymes [BR:
dosa01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
Os05t0293500-01 (Os05g0293500)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Gyro_capsid
Motif
Other DBs
RAP-DB:
Os05t0293500-01
LinkDB
All DBs
Position
chr05:complement(join(12937583..12938355,12936925..12937054,12933195..12933413))
AA seq
373 aa
AA seq
DB search
MAAIFIFIWLFASVLSISSASSPLLINGSTADAAPDCGTGNPIDDCWRCDPGWADNRQRL
ADCAVGFGRRAVGGKGGRVYVVNDTGDDAARPAPGTLRYGLVQDEPLWIVFAGDMTISPA
HELVVSSRKTVDGRGARVVVGDGGACFAVRGASDVVIHGLTIRRCRPAPKLEAGMSDGDG
VHNSSDVWVDHCTVEACADGLIDVVVGSTRVTLSNNLLRNHDKAILLGHNDDYTDDKAMQ
VTVAFNRFGPGLVQRMPRCRFGLFHVINNDYIAWQKYAIGGSASPTIISHGNRFYADMAK
EVTKRDDDVPESVWHHWNWVSDGDLMLNGAFFRASGEARTDNLKAPSFARSAPSVPSMTS
SAGALSCKEGSHC
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggctgccatcttcatattcatatggttgttcgcctccgttttatccatttcatcagct
tcttctcctttgctgatcaatggtagtactgctgatgctgcaccggactgcggtaccggc
aacccgatcgacgactgctggcgttgcgaccccggctgggccgacaaccggcagcggctc
gccgactgcgccgtcgggttcggccgccgcgccgtcggcgggaaggggggcagggtgtat
gtcgtgaacgacaccggcgacgacgcagcccgcccggcacccggcacgctccggtacggc
ctcgtccaggacgagcccctctggatcgtgttcgccggcgacatgaccatcagccccgcc
cacgagctggtcgttagctcgcgcaagaccgtggacggcaggggcgcccgcgtggtggtt
ggcgacggcggcgcgtgcttcgcggtgaggggcgcgagcgacgtcgtcatccacgggctt
accatacgccggtgcaggccggcacccaagctggaggccggcatgtcggacggcgacggc
gtccacaactcgagcgacgtgtgggtcgaccactgcacggtggaggcctgcgccgacggg
ctgatcgacgtggtcgtaggttccacccgcgtgacgctttccaacaacctcctgcgcaac
catgacaaggcaattctcctcggccacaacgacgactacaccgacgacaaggccatgcag
gtcaccgttgccttcaatcgctttggaccaggcctcgtccaaagaatgccaaggtgtcgg
tttggtcttttccacgtcatcaacaacgattacatagcatggcaaaagtacgccattggg
ggcagtgcttcaccgaccataattagccacggcaacagattctatgctgatatggccaaa
gaggtgacgaagcgcgatgacgatgtgccggagagcgtgtggcaccactggaactgggta
tccgacggcgacctgatgctcaacggcgcgttcttcagggcatcaggcgaagcaaggaca
gataatttgaaagcccctagctttgcaaggtctgccccctccgtgccgtcgatgacttcc
tcggcaggcgccctctcctgcaaggagggctcgcactgctga
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