KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os08t0344100-01
Entry
Os08t0344100-01   CDS       T02163                                 
Symbol
Os08g0344100
Name
(RAP-DB) Similar to Histone deacetylase.
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03082  ATP-dependent chromatin remodeling
dosa03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    Os08t0344100-01 (Os08g0344100)
   03083 Polycomb repressive complex
    Os08t0344100-01 (Os08g0344100)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:dosa03036]
    Os08t0344100-01 (Os08g0344100)
Enzymes [BR:dosa01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     Os08t0344100-01 (Os08g0344100)
Chromosome and associated proteins [BR:dosa03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     Os08t0344100-01 (Os08g0344100)
   HDAC complexes
    Sin3A-HDAC complex
     Os08t0344100-01 (Os08g0344100)
    BRAF-HDAC complex
     Os08t0344100-01 (Os08g0344100)
    REST complex
     Os08t0344100-01 (Os08g0344100)
    SHIP complex
     Os08t0344100-01 (Os08g0344100)
    MiDAC complex
     Os08t0344100-01 (Os08g0344100)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     Os08t0344100-01 (Os08g0344100)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    Os08t0344100-01 (Os08g0344100)
  Chromatin remodeling factors
   NuRD complex
    Os08t0344100-01 (Os08g0344100)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
RAP-DB: Os08t0344100-01
LinkDB
Position
chr08:join(15554211..15554753,15556756..15557196,15557288..15557430,15557858..15557948,15558033..15558167,15558714..15558737)
AA seq 458 aa
MAASGEGASLASAAGGEDGRRRRVSYFYEPSIGDYYYGQGHPMKPHRIRMAHSLVVHYGL
HRLLELSRPYPASDADIRRFHSDDYVAFLASATGNPALLDARAVKRFNVGEDCPVFDGLF
PFCQASAGGSIGAAVKLNRGDADITVNWAGGLHHAKKGEASGFCYVNDIVLAILELLKFH
RRVLYVDIDVHHGDGVEEAFFTTNRVMTCSFHKYGDFFPGTGHITDVGAGEGKHYALNVP
LSDGIDDDTFRDLFQCIIKKVMEVYQPDVVVLQCGADSLAGDRLGCFNLSVKGHADCLRY
LRSFNIPMMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNDYYEYFGPDYNLHIQP
RSVENLNSTKDLENIKSMILDHLSKIEHVPSTQFHDRPSDPEAPEQEEEDMDKRPPQRSR
LWSGGAYESDTEDPDNMKTETNDLSASSVMKDESNDDS
NT seq 1377 nt   +upstreamnt  +downstreamnt
atggcggcgtccggcgagggggcgtcgctggcgtcggcggcgggaggggaggacgggcgg
cggcggcgggtgagctacttctacgagccgtcgatcggggactactactacgggcagggg
cacccgatgaagccccatcgcatccgcatggcgcactcgctggtggtccactacggcctc
caccgcctcctcgagctctcccgcccctacccggcctccgacgccgacatccgccgcttc
cactccgacgactacgtcgccttcctcgcctccgccaccgggaaccccgccctgctcgac
gcccgcgccgtcaagcgcttcaacgtcggcgaggactgcccggtcttcgacggcctcttc
cccttctgccaggcctccgcggggggcagcatcggcgccgccgtcaagctcaaccgcggc
gacgccgacatcaccgtcaactgggcggggggcctccaccacgccaagaagggcgaggcc
tccggcttctgctacgtcaacgacatcgtcctcgccatcctcgagctcctcaagttccac
aggcgtgtgctatatgtagacattgatgtccaccatggagatggcgtggaggaagctttc
ttcactacgaatcgagtcatgacttgttcctttcacaagtatggggactttttccctggt
actgggcatatcactgatgttggagcaggcgaaggaaaacattatgctttaaatgtgccc
ctgagtgatggcattgatgatgatacctttcgtgatctgttccagtgcatcatcaaaaag
gtaatggaggtttatcagccagatgtagttgttctccagtgtggagccgactctttggct
ggagacaggttaggttgcttcaacctgtctgtgaaaggtcatgcagactgcctccgttac
cttaggtcattcaatattcctatgatggttttgggaggtgggggttacaccatcagaaat
gttgctcgctgctggtgctatgagactgcagttgctgttggagttgaacctgataacaag
ttaccttataatgactactatgagtactttggtcctgattataatctccatattcaaccc
agaagtgtggagaacctgaattcgactaaagacctggagaacataaagagcatgatattg
gatcatctctcaaaaattgagcatgttccgagcactcagttccatgacagaccatcagat
cctgaagctccagagcaggaagaggaggacatggacaagagaccacctcagcgcagtagg
ttatggagtggaggagcttatgaatctgatacagaggatcctgacaacatgaaaactgag
accaatgacttatctgccagctctgtcatgaaggatgaatcgaatgatgattcctag

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