Oryza sativa japonica (Japanese rice) (RAPDB): Os08t0344100-01
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Entry
Os08t0344100-01 CDS
T02163
Symbol
Os08g0344100
Name
(RAP-DB) Similar to Histone deacetylase.
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03082
ATP-dependent chromatin remodeling
dosa03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
Os08t0344100-01 (Os08g0344100)
03083 Polycomb repressive complex
Os08t0344100-01 (Os08g0344100)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dosa03036
]
Os08t0344100-01 (Os08g0344100)
Enzymes [BR:
dosa01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
Os08t0344100-01 (Os08g0344100)
Chromosome and associated proteins [BR:
dosa03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
Os08t0344100-01 (Os08g0344100)
HDAC complexes
Sin3A-HDAC complex
Os08t0344100-01 (Os08g0344100)
BRAF-HDAC complex
Os08t0344100-01 (Os08g0344100)
REST complex
Os08t0344100-01 (Os08g0344100)
SHIP complex
Os08t0344100-01 (Os08g0344100)
MiDAC complex
Os08t0344100-01 (Os08g0344100)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
Os08t0344100-01 (Os08g0344100)
Heterochromatin formation proteins
Other heterochromatin formation proteins
Os08t0344100-01 (Os08g0344100)
Chromatin remodeling factors
NuRD complex
Os08t0344100-01 (Os08g0344100)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
RAP-DB:
Os08t0344100-01
LinkDB
All DBs
Position
chr08:join(15554211..15554753,15556756..15557196,15557288..15557430,15557858..15557948,15558033..15558167,15558714..15558737)
AA seq
458 aa
AA seq
DB search
MAASGEGASLASAAGGEDGRRRRVSYFYEPSIGDYYYGQGHPMKPHRIRMAHSLVVHYGL
HRLLELSRPYPASDADIRRFHSDDYVAFLASATGNPALLDARAVKRFNVGEDCPVFDGLF
PFCQASAGGSIGAAVKLNRGDADITVNWAGGLHHAKKGEASGFCYVNDIVLAILELLKFH
RRVLYVDIDVHHGDGVEEAFFTTNRVMTCSFHKYGDFFPGTGHITDVGAGEGKHYALNVP
LSDGIDDDTFRDLFQCIIKKVMEVYQPDVVVLQCGADSLAGDRLGCFNLSVKGHADCLRY
LRSFNIPMMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNDYYEYFGPDYNLHIQP
RSVENLNSTKDLENIKSMILDHLSKIEHVPSTQFHDRPSDPEAPEQEEEDMDKRPPQRSR
LWSGGAYESDTEDPDNMKTETNDLSASSVMKDESNDDS
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgtccggcgagggggcgtcgctggcgtcggcggcgggaggggaggacgggcgg
cggcggcgggtgagctacttctacgagccgtcgatcggggactactactacgggcagggg
cacccgatgaagccccatcgcatccgcatggcgcactcgctggtggtccactacggcctc
caccgcctcctcgagctctcccgcccctacccggcctccgacgccgacatccgccgcttc
cactccgacgactacgtcgccttcctcgcctccgccaccgggaaccccgccctgctcgac
gcccgcgccgtcaagcgcttcaacgtcggcgaggactgcccggtcttcgacggcctcttc
cccttctgccaggcctccgcggggggcagcatcggcgccgccgtcaagctcaaccgcggc
gacgccgacatcaccgtcaactgggcggggggcctccaccacgccaagaagggcgaggcc
tccggcttctgctacgtcaacgacatcgtcctcgccatcctcgagctcctcaagttccac
aggcgtgtgctatatgtagacattgatgtccaccatggagatggcgtggaggaagctttc
ttcactacgaatcgagtcatgacttgttcctttcacaagtatggggactttttccctggt
actgggcatatcactgatgttggagcaggcgaaggaaaacattatgctttaaatgtgccc
ctgagtgatggcattgatgatgatacctttcgtgatctgttccagtgcatcatcaaaaag
gtaatggaggtttatcagccagatgtagttgttctccagtgtggagccgactctttggct
ggagacaggttaggttgcttcaacctgtctgtgaaaggtcatgcagactgcctccgttac
cttaggtcattcaatattcctatgatggttttgggaggtgggggttacaccatcagaaat
gttgctcgctgctggtgctatgagactgcagttgctgttggagttgaacctgataacaag
ttaccttataatgactactatgagtactttggtcctgattataatctccatattcaaccc
agaagtgtggagaacctgaattcgactaaagacctggagaacataaagagcatgatattg
gatcatctctcaaaaattgagcatgttccgagcactcagttccatgacagaccatcagat
cctgaagctccagagcaggaagaggaggacatggacaagagaccacctcagcgcagtagg
ttatggagtggaggagcttatgaatctgatacagaggatcctgacaacatgaaaactgag
accaatgacttatctgccagctctgtcatgaaggatgaatcgaatgatgattcctag
DBGET
integrated database retrieval system