Entry |
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Symbol |
Os11g0176100
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Name |
(RAP-DB) Nucleotide-binding, alpha-beta plait domain containing protein.
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KO |
K14407 | cleavage stimulation factor subunit 2 |
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Organism |
dosa Oryza sativa japonica (Japanese rice) (RAPDB)
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:dosa00001]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Os11t0176100-01 (Os11g0176100)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:dosa03019]
Os11t0176100-01 (Os11g0176100)
Messenger RNA biogenesis [BR:dosa03019]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
Os11t0176100-01 (Os11g0176100)
U7-dependent histone pre-mRNA processing factors
Os11t0176100-01 (Os11g0176100)
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SSDB |
|
Motif |
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Other DBs |
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LinkDB |
|
Position |
chr11:join(3796165..3796210,3796597..3796675,3797134..3797308,3798430..3798463,3798577..3798815,3798908..3798985,3799209..3799244,3799336..3799758,3800018..3800263,3800488..3800619)
|
AA seq |
495 aa
MAAAAPAGAQNRCVFVGNIPYDATEEQLVQICEEVGPVVSFRLVIDKETGKPKGYGFCEY
KDEETALSARRNLQGYEINGRQLRVDFAENGRNADRNREKGRGGPGMASSVDTQKQLAGT
PVVGDTGLHQPVGLPSAIHAASVMAGILGGSQTANVQNGLPVQYGLGNDPLTHYLARMSK
HQLYEIMSELKSLTSQNKDVANKLLQGIPQLSKALFQSQIMLGMVTPQMMQMAKSQQPSS
SLAQSSSHISEPFPQPDAMISSVPRPSASLPNPNVLQDPSAQLHNFPQYPHSSQPAGTIF
PHGSQSGVGIHPPIVSQLLGASSSVPPLPLATSGSLISQVQPPFMPHHPRPPAMPAGMQQ
LPLTHPHVPQVPAIPDIAQKEMRFPEQANRSTEFAHHPKLRKLEDGTSTPGIVNNNPAVY
PAPSQGMLPGGPSGSYNSAAVSFQQPENEVPQLTPDVESALLQQVLQLTPEQLSSLPVEQ
QQQVIQLQKMLSAGK |
NT seq |
1488 nt +upstreamnt +downstreamnt
atggccgccgcggcccccgccggcgcccagaaccgctgcgtcttcgtcgggaacattcct
tacgatgcgacggaggagcagctcgtgcagatttgcgaggaagtcggccctgtggtctca
ttcagattggttattgataaagaaacagggaagccaaagggttatgggttttgtgagtac
aaggatgaggagactgctctaagtgcacgccggaaccttcaaggttatgaaattaatggc
cgtcagttacgtgttgattttgctgaaaatgggaggaatgctgacagaaacagagaaaag
ggtcgtggaggacctggaatggcatccagtgttgatactcagaaacaattagctgggact
ccggttgtaggcgatacaggtcttcatcagccagttggtcttccatcggctattcatgct
gcatctgtgatggctggtattcttggaggatctcaaactgcaaatgttcaaaatggttta
cctgtccagtatgggcttggaaatgaccctcttactcattatttggccagaatgtcaaag
caccagttgtatgaaatcatgtctgagttgaagtccctaactagtcaaaataaggatgtt
gccaacaaactgctgcaaggaattccacagctgtcaaaggccctatttcagtcacaaata
atgcttggaatggtgacgccccagatgatgcagatggcaaagagccaacagccctctagc
tccttggcacaatcatcatctcacataagcgaaccatttccacagccagatgctatgata
tcaagtgttccaagaccttctgcaagcttgccaaacccaaatgtcctgcaggacccttct
gcacagctgcataattttcctcagtatccgcattcatctcagcctgcgggcacaatattt
ccacatggaagtcagtctggggtgggcatacatcctccaattgtatctcaactccttggt
gcctcttccagtgttcctcctctaccccttgctacctcaggaagcctgatatcgcaggtt
cagcccccatttatgccacatcaccctaggccaccagctatgccagcgggtatgcaacaa
ctaccattgactcatccacatgttccccaggtacctgctatacctgatatagcacagaag
gaaatgaggtttcctgagcaagcaaatcgttcgacggagtttgctcatcatccaaagttg
cgaaaattggaggatggaacatccacacctggaattgtaaacaacaatccagctgtttat
cctgctccatcccaaggaatgctccctggtggaccatcagggagctataattctgctgct
gttagcttccagcagccagagaacgaagtgcctcagctcacacccgatgttgagtcggct
cttctgcagcaagtcctacaactgacacctgagcagcttagttcgttgccagtagagcaa
caacagcaggtgattcagcttcaaaagatgctatcggctggtaaataa |