KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os11t0176100-01
Entry
Os11t0176100-01   CDS       T02163                                 
Symbol
Os11g0176100
Name
(RAP-DB) Nucleotide-binding, alpha-beta plait domain containing protein.
  KO
K14407  cleavage stimulation factor subunit 2
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    Os11t0176100-01 (Os11g0176100)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dosa03019]
    Os11t0176100-01 (Os11g0176100)
Messenger RNA biogenesis [BR:dosa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     Os11t0176100-01 (Os11g0176100)
    U7-dependent histone pre-mRNA processing factors
     Os11t0176100-01 (Os11g0176100)
SSDB
Motif
Pfam: RRM_1 CSTF2_hinge CSTF_C partial_CstF RRM_7 DUF4660
Other DBs
RAP-DB: Os11t0176100-01
LinkDB
Position
chr11:join(3796165..3796210,3796597..3796675,3797134..3797308,3798430..3798463,3798577..3798815,3798908..3798985,3799209..3799244,3799336..3799758,3800018..3800263,3800488..3800619)
AA seq 495 aa
MAAAAPAGAQNRCVFVGNIPYDATEEQLVQICEEVGPVVSFRLVIDKETGKPKGYGFCEY
KDEETALSARRNLQGYEINGRQLRVDFAENGRNADRNREKGRGGPGMASSVDTQKQLAGT
PVVGDTGLHQPVGLPSAIHAASVMAGILGGSQTANVQNGLPVQYGLGNDPLTHYLARMSK
HQLYEIMSELKSLTSQNKDVANKLLQGIPQLSKALFQSQIMLGMVTPQMMQMAKSQQPSS
SLAQSSSHISEPFPQPDAMISSVPRPSASLPNPNVLQDPSAQLHNFPQYPHSSQPAGTIF
PHGSQSGVGIHPPIVSQLLGASSSVPPLPLATSGSLISQVQPPFMPHHPRPPAMPAGMQQ
LPLTHPHVPQVPAIPDIAQKEMRFPEQANRSTEFAHHPKLRKLEDGTSTPGIVNNNPAVY
PAPSQGMLPGGPSGSYNSAAVSFQQPENEVPQLTPDVESALLQQVLQLTPEQLSSLPVEQ
QQQVIQLQKMLSAGK
NT seq 1488 nt   +upstreamnt  +downstreamnt
atggccgccgcggcccccgccggcgcccagaaccgctgcgtcttcgtcgggaacattcct
tacgatgcgacggaggagcagctcgtgcagatttgcgaggaagtcggccctgtggtctca
ttcagattggttattgataaagaaacagggaagccaaagggttatgggttttgtgagtac
aaggatgaggagactgctctaagtgcacgccggaaccttcaaggttatgaaattaatggc
cgtcagttacgtgttgattttgctgaaaatgggaggaatgctgacagaaacagagaaaag
ggtcgtggaggacctggaatggcatccagtgttgatactcagaaacaattagctgggact
ccggttgtaggcgatacaggtcttcatcagccagttggtcttccatcggctattcatgct
gcatctgtgatggctggtattcttggaggatctcaaactgcaaatgttcaaaatggttta
cctgtccagtatgggcttggaaatgaccctcttactcattatttggccagaatgtcaaag
caccagttgtatgaaatcatgtctgagttgaagtccctaactagtcaaaataaggatgtt
gccaacaaactgctgcaaggaattccacagctgtcaaaggccctatttcagtcacaaata
atgcttggaatggtgacgccccagatgatgcagatggcaaagagccaacagccctctagc
tccttggcacaatcatcatctcacataagcgaaccatttccacagccagatgctatgata
tcaagtgttccaagaccttctgcaagcttgccaaacccaaatgtcctgcaggacccttct
gcacagctgcataattttcctcagtatccgcattcatctcagcctgcgggcacaatattt
ccacatggaagtcagtctggggtgggcatacatcctccaattgtatctcaactccttggt
gcctcttccagtgttcctcctctaccccttgctacctcaggaagcctgatatcgcaggtt
cagcccccatttatgccacatcaccctaggccaccagctatgccagcgggtatgcaacaa
ctaccattgactcatccacatgttccccaggtacctgctatacctgatatagcacagaag
gaaatgaggtttcctgagcaagcaaatcgttcgacggagtttgctcatcatccaaagttg
cgaaaattggaggatggaacatccacacctggaattgtaaacaacaatccagctgtttat
cctgctccatcccaaggaatgctccctggtggaccatcagggagctataattctgctgct
gttagcttccagcagccagagaacgaagtgcctcagctcacacccgatgttgagtcggct
cttctgcagcaagtcctacaactgacacctgagcagcttagttcgttgccagtagagcaa
caacagcaggtgattcagcttcaaaagatgctatcggctggtaaataa

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