Candidatus Babela massiliensis: BABL1_gene_167
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Entry
BABL1_gene_167 CDS
T02948
Symbol
ykoU
Name
(GenBank) Eukaryotic-type DNA primase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dpb
Candidatus Babela massiliensis
Brite
KEGG Orthology (KO) [BR:
dpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BABL1_gene_167 (ykoU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpb03400
]
BABL1_gene_167 (ykoU)
Enzymes [BR:
dpb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BABL1_gene_167 (ykoU)
DNA repair and recombination proteins [BR:
dpb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BABL1_gene_167 (ykoU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
DUF3829
Motif
Other DBs
NCBI-ProteinID:
CDK30847
UniProt:
V6DGX3
LinkDB
All DBs
Position
complement(827740..828681)
Genome browser
AA seq
313 aa
AA seq
DB search
MNKIKINNHLIEISKEDKILYSNNLDNSEDITKAQILEYYKSISKLMLPQLKNRPLMMRR
YPNGINGKFFYQKNISSYFPHWIKRAKILLKTQSNKYNEYVVCQNEATLIYLSNQAVLEY
HIWLSKIDKINYPDKLIFDLDPSTLDFEPLRKCALMLKELLENLDLVPFLMTTGSHGLHV
VVPIKQINKPNKLIDFATLKKLADRCAEQIVIKEPELFTLKIRKKSREKKLFIDTLRNQY
GATSIAPYSTRAKPNCPIATPLNWQEIYQKDLHSQKYNIKNIINRIKSIEDPWSSFFKSA
KNININQALSKIK
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaataaagataaataaccacttaatagagatctcaaaagaagacaaaatatta
tactcaaataatttagacaactcagaagatataacaaaagcccaaatcttagagtattac
aaaagcatttcaaaacttatgttaccacaacttaaaaatagaccacttatgatgcgtcgt
tatccaaatggcataaatggaaaatttttttatcaaaaaaatatatcttcttactttcct
cattggataaaaagagcaaaaatactattgaaaacacaaagcaacaaatataacgaatat
gttgtatgccaaaatgaagcaacacttatatatttatcaaatcaagcagttcttgaatat
catatatggctttctaagatcgataaaataaattatcctgataaattaatatttgattta
gacccttctactttagatttcgagccgctcagaaagtgtgctttaatgttaaaagaatta
ttagagaatttagatttagtgccatttttaatgactacaggttcgcacggtcttcatgta
gtagtaccaattaaacagatcaataaaccaaataaacttattgattttgcaactttaaaa
aaattagcagatagatgtgccgaacagattgttattaaagaaccagaactatttacactt
aaaataagaaagaaatctagagaaaaaaaattatttatagatactttgagaaatcaatat
ggagcaacatctatagcaccttattcaacaagagcaaaaccaaattgtccaatagcaact
ccacttaattggcaagaaatttaccaaaaagatctacactcacaaaaatataatatcaaa
aatataataaacagaattaaaagcatagaagacccttggtccagcttttttaaaagtgct
aaaaatattaatattaatcaagctttaagcaaaataaaataa
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