Drosophila pseudoobscura: 4812779
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Entry
4812779 CDS
T01032
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
Organism
dpo
Drosophila pseudoobscura
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pericardin_rpt
Motif
Other DBs
NCBI-GeneID:
4812779
NCBI-ProteinID:
XP_001353286
UniProt:
A0A6I8UCJ0
LinkDB
All DBs
Position
X:complement(44474597..44482236)
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AA seq
1829 aa
AA seq
DB search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NT seq
5490 nt
NT seq
+upstream
nt +downstream
nt
atgctgccctttcgctggggcctgctactaggcattgtggtgctcatagcgtgcgccaat
ggagcagctatcgatcaatcgtcgcagaacgaagatgaactctctggtctgtctgatttg
gagcgatcaaagagaagcggaagaggctatgcaagaggacagacgcagtcgcagtacttg
aactttggcaagcccgaagaggatggcaaggccgaggcagaggctaacgaaagcggctca
cgctcgacagtttctggcagccacggaatggggcaggcccagagtcagttctcctcggga
gattgcagcggctgttccggctatcaaactggaagctcactcgatggcagtggaggtctt
ataggaagacccgatgctattattagtctaccaagtgcagatgctgttagcggctttggt
ggacagcctggatttcggagtcagcccggttccggaagtccagttggtgggcagcctggt
attggaggatttccaggagtcactgggggacaagctggacagcccggacttggagctggt
caccaaggacttgatggaaaacatcctggcgggggagaaataattagtgggccaggaatc
gacggacgacaaacgggtgctgctggacagcccgggtacgtaactcagcctggagctgag
gatcagtctggaggtcaaaccatatacggaacacaaccaggagttggtgaacagacaggt
atcggcagcggacagcccggatttggggctcaacctgtagttggaggtcaacccggatac
ggaacacaagcaggagttgttggacagccaggtatcggtagcggacagcccggatttggg
gctcaacctgtagtcggaggtcagcccggatacggaacacaaccaggagttggtggacag
acaggtatcggtggcggacagcccggatatggaggtcaatctggggttggaggtcaacct
ggatacggaacacaaccaggagttggtggacagacaggtatcggtggcggacagcccgga
tatggaggtcaatctggggttggaagtcaacctggatacggaacacaaccaggagttggt
ggacagacaggtatcggtggcggacagcccggatatggaggtcaatctggagttggaggt
caacctggatatggaacacaaccaggagttggtggacagacaggtatcggtggcggacag
cccggatatggaggtcaatctggggttggaggtcaacccgggtacggaacacaatcagga
gttggcggacagcccggatttggaggtcaacctggaactggaggtaaatctgtatacgga
acacaaccaggagttagtggaccgacaggtatcggtggcggacagcccggatatggaggt
caatctggggttgtaggtcaacctggatacggaacacaaccgggagttggtggacagaca
ggtatcggtggcggacagcccggatatggaggtcaatctggggttggaggtcaacccgga
tacggaacacaaccaggagttggtggacagacaggtatcggtggcggacagcccggatat
ggaggtcaatctggggttggaggtcaacccggatacggaacacaaccaggagttggcgga
cagcctggatttggaggtcaacctggaactggaggtaaatctggatacggaacacaacca
ggagttagtggaccgacaggtatcggtggcggacagcccggatatggaggtcaatctgcg
gttgtcggtcaacctggatacggaacacaaccgggagttggtggacagacaggtatcggt
ggcggacagcccggatatggaggtcaatctggggttggaggtcaacctggattcggaaca
caaccaggagttggtggacagacaggtatcggtggcggacagcccggatatgggggtcaa
tctggggttggaggtcaacccggatacggaacacaaccaggagttggtggacagcctgga
tttggaggtcaacctggaactggaggtcaacctggattcggaacacaaccaggagttagt
ggaccgacaggtatcggtggcggacagcccggatatggaagtcaatctggggttggaggt
caacccggatacggaacacaaccaggagttcgtggacagacaggtatcggtggcggacag
cccggatatggaggtcaatctggggttggaggtgaacccggatacggaacacaaccagga
gttggcgaacagcctggatttggaggtcaatctggggttggaggtaaatctggatacgga
acacaaccaggagttagtggaccgacaggtatcggtggtggacagctcagttttggaggt
caacctggagttggaagtcaacccggatacggaacccaaccaggagctagtggacagaca
ggtatcggtggcggacagcccggatatggaggtcaatctggggttggaggtcaacccgga
tacggaacacaaccaggagttggtgcacagacaggtatcggtggcggacagcccggatat
ggaggtcaatctggggttgtaggtcaacctggatacggaacacaaccgggagttggtgga
cagacaggtatcggtggcggacagcccggatatggaggtcagtctggggttggaggtcca
cctggatacgaaacacaaccaggagttggtggacagataggcatcggtggcggacagccc
ggatatggaggtcaatctggggttggaagacaacccggatacggaacacaaccaggattt
ggcggacagcctggatttggaggtcaacctggaactggaggtaaatctggatacggaacg
caaccaggagttagtggaccgacaggtatcggtggtggacagctcgggtttggaggtcaa
cctggagttggagctcaacccagctacggaacccaagcaggagttggtggaccgacgggt
atcggtggtggacaacccggatatggaggtcaatctggggctggaggtcaaccccgttac
ggaacccaaccaggatttggtggacagcctggacttggaggtcaacgtggagctggaggt
caacccggatatggaacacaacaaggagttggtgtacagactggtatcagtggtgggcaa
ccaggatatggaggtcaatctggggccttaggtcaacccggatacgaagcccaaccagga
tttggtggacagcctggatttggagggcaacctggagctggaggtcaatccggatacgga
acacaaccaggagttggtggacagactggtatcggtggcggactgcccggattcggggct
caacctggagttggaggtcaacccagttacggaacccaagcaggagtcagtggacagcct
gctatcggtgggagacagccaggatacggagcacaacccgtagttggggggcagactggt
atcgatggaggacaccccggatttagaggtcaacccggatacggaacacaaccaggagtt
agtggacagacaggtgtcggtggcggacagcccggatatggtggtcaatctggagttgga
ggtcaacgcggatacggaacacaaccaggcgttggtggacagacaggtgtcggtggcgga
cagcccggatatggaggtcaacctggagttggaggtcaacccagctacggaacccaacca
ggagctagtggacagacaggtatcggtgccggacagcccggatatggaggtcaatctgga
gttggaggtcaacccgggtacggaacacaaccaggcgttggtggacagacaggtgtcggt
gccggacagcccggatatggaggtcaacctggagttggaggtcaacccggatacggaacc
caaccaggagttggtggacagacaggtatcgttggcggacagcccggatttataggtcaa
cagcccggagcaggaggatcgcagtttgatggaaggcacccgggaaccggtggtacttca
gatggccaaataggtgctccgggacggtatacagctggagctggtgtcactcctggagct
gctggtgttggcgcgccaagtacagttgccggcggagctgatgacacattttctcaagcg
gcatccactattgggaacggccaggcatctgccagtgccgagggcaaaaagaatggcgga
actgctaagacccaagtatccggcacatacagtacgggcggttctttcagcgctagtgca
atgacttccgacgcagatcgggctgccagcgcccaggttactggcaatgctgatggcgct
atgagccagtcccaaggctctggaggaccggcccagtcccaggcccaagtgcaggttaac
tcgaaggatggaggcaccaaggcttcatcacagagtgggggtctgattcaccagagccag
agtgaggtgcaggccaacgataagggcggcttggccgatgcccagtccagcggaccgggc
caaacctcttcccaagctcaaatcggcttccgtccaggtcaggataccagttcggtagtg
gcaccaggtggcggacaggcttccgcacaatcgggcagccattctggccagagccagtct
cagatccaaggaacttccagctttggggtatcatatcacggcgctgcacagtccgcatca
ggaactaaggagcaggtggacacctatcgggagcaaaatcgagagctcttcaatacaatc
agccagtttggcaacagtggaaatgctgtaaccgatcgggctgatgccgtctttagtggc
ccggcactcacgtctgaatctgattcaatacccgagctgcagctgaagtctacaaagaca
agcaaggaagagcctgagaaggtcgataagaagccagatcaatcggaaccagttcaatac
gacgacgaggaagaggacgagggggatgaatacgacgaggatgagtactacaacgagaaa
cctgtcaagctagaggagggtccaaagccaccgaacaagattaaggattcggagtccaca
cctcatccacagacctatacccagtcgtcccccacgcagaagcagcaggcagtagtggcc
ccattgccagcggaaaagtaccagctggtgcagaaacagaacggactcattaatagctac
tcggagcgatcaaccacagagtccgtgcccagtgggttccgcggcacggtgaacgtgcaa
aagaagtttcacacaaagtcgcttgagcttcataataccgacaagaaggtcgaaatcagt
gccgacactgactccgatgccccgagtacacccactcgcggtagcaaagcgcctcgcgca
ccagacagctatgtaacagtcaccaagtcggtgactggaagcatggacaatagcaagaac
ccaccgcaggataacaagaacttccagtccacgtactacaccaagtcctcgacctgcgga
tacttcaccttctcctgtaacattgtctacggagcgaatggacgcagcaagatctgtcgc
ccaaaagccccagccaatggcaagtgctaa
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integrated database retrieval system
