Drosophila pseudoobscura: 4813020
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Entry
4813020 CDS
T01032
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
dpo
Drosophila pseudoobscura
Brite
KEGG Orthology (KO) [BR:
dpo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpo03019
]
4813020
Messenger RNA biogenesis [BR:
dpo03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
4813020
3'-5' decay
Other 3'-5' decay factors
4813020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
ResIII
zf-CCCH
AAA_19
PAM2
AAA_22
PhoH
UvrD-helicase
AAA_14
Mg_chelatase
zf-C2H2_jaz
AAA_7
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
4813020
NCBI-ProteinID:
XP_001353198
UniProt:
A0A6I8WCY3
LinkDB
All DBs
Position
X:43438001..43448883
Genome browser
AA seq
2180 aa
AA seq
DB search
MAAEKEMLAHDMVRRRNWARAVALYDQLISAAPGSAQAQATRAQKDQQIACLLGRCECLL
ELGKYEGCLADAYKVLTLLAEQTECLASVSRARRWLVHALFKMHKYGDAEIFLSKWINEL
SGQQIFSDISKTLERYKSIIQMIMNGQHKAQAQKIPHARLEDEMAILDTKLDHWATNNLP
LDKYSKLLSNKGLKKREQQQQQQQQQQQQNGSGSGSGSYASSSSSSSTGSSSTMSSSNTN
LHKTNDLLAAMKLTAGKHQPASPDGPSLDAASGGDQAAPSTTCSYCAINFLTRNELRQHC
QTEAHQKVIMSDEGRDWKWRPPPRGYTLDTYSLCETFSDAHTCHYGAQCVEAHGQDELNE
WKERFEYRRMRVQKACEKELYGKSYTEQVLERWIQATAPERVMCERVPEIEAKCEQQLVT
SISSKTSKREWLFQLETKQPLKAVALLQDAHRNHFALKSIKLGTASASAQVELKSDQEWV
AAAAAAAAAEAASGSEPAEGEEESSPPPQQPATLSHEVTVEFHTEIYGTFRQAICFDVGQ
EPLLVRHLCVDVLPVNDAEKIEEIKRDIINSSATRWDVANTQLTRFETTIGTHLKTEAYL
SDLDHERELLERYPCPRAATFTLTQSTIVEKRLTQNNYRSRIHELLYVEEIARYEQIARY
NVRTKLTVASNYILTPAGMATSTAKYSLAGELFALMRLGKDISEDTSPGRLILSNCCSVY
ISAPEEPGRKVSASSASSGSEQTRPVYEALIEDKGKNVIYLKLSAKCVEAMALQADTELD
VDIQFQLNRMPYCEWHNAVDKITDFRLIFPATELEPNIPWTPKKQWADACEPKLNAKQRE
AVNAITTALSIKLPPILLIGPFGTGKTYTLAQAIKQLLAQPEAKILICTHSNSAADLYIK
EYLHPWIEEGLEEATPLRVYYHKRWSATVNGVVQKYCITDGVGNFKRPTLEDIMRHRIVV
VTLSISMELATLGLPKGLFTHIFLDEAAQAMECEAIMPLALANDSTRIVLAGDHMQMSPE
LFSAFAKERKLHISLLERLYDHYPSNFPCKILLCENYRAHEAIIRFTSELFYEQKLVASG
KQPRHERFYPLTFFTTRGEDVQDKNSTAFYNNAEVYEVVERVSELRKRWPSAWGKLNDTS
IGIMTPYADQVFRIRSELRKRRMGGISVERVLNVQGKQFRAVFLSTVRTRRTCMPQGSGP
GVAAATSIGDADTDYGFLSNSKLLNTAITRAQSLVAVVGDPVALCSIGRCRKVWERFIEI
CDEHKSLFGLTWSNLRSQLDGVELKRGYVLNPLAPEFVPRALQPEAYLRDQAALYLNGPQ
HGHGTHGPPGPPAHYASAAGMLGPGPAAAHQMNQMAAAMAANQQLSHMYSTHMAAMMAAA
AAVGGGKAANGPGPGPGPPPHYGGGGHMGMRGPPPNGAPQPPHLRGMPGPGPPGPPPPGA
GGPPPPPYNQYATMQHWRPPIAPQQQPGGQGQGQGPQPQNPNASLWGPPPQTNPWSVLPP
NKQQQQPPVTAPGRGPGPGPGSLQPPPPNANPSLPLRGGSVPPPPPNAPPAAQLLRNPSE
LGYLAKKTLYNHGQAQPPPPPPHHLYGPPPPQQQAPPPMQGMQRGSSVPNGPMSPMENGP
PLPYLRHNGSGYNSYDKPLVPPQQQQQQQQPPFMYGAKQPSPSSLRFGPPSHDLLPPNVS
IYEMAFNPKEEQYKWYLKLLETVGQEGANKFADMLRQVMVTLQQQQQQQQQQQGHQQQLK
QPPHQQMVNNPMLNNPHVMGGGGGGGGQGQRPQYPMMYPQNQPQQPLQPQSVEASPPLEN
FNHQIDLVFNSIMNGANDIAQPILRDVLGMVAGTASAPGAGPSLTNGLNALELQQQQQQQ
QQQQQSRLFAIMQQQQQQQQQQAKIPPGPGPGLYAGHLAGGPPQGGGPGPGPGPGPGPGP
HQPPPNSSANNSNFMAVNPLLNDKPYNNQMNMHNNVGPNNAGVGVGVGVGVAGVPGTNGL
LSNGNSVPLYRRQALTGNGIGIGIGHGIGNSYNNMPGLDTGTNLIEALFHANNAVADHSV
KSSDHVQGLLYNNFSALKSGHEMDLFQSMPLPVPHSEANNHHHQHQQHQQASSAATTYAA
VLSQGPQAASSAGGAGQGQGQGQNQNQGQGQAQSQSQAQSQSQPAPAAKSSQAGGELEKD
PFAAIRELGQATTGFYNYFQ
NT seq
6543 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgaaaaggagatgctggcccacgacatggtccggcgacggaactgggcccgg
gccgtggcgctctacgaccaactgatctccgcagcgcctggctccgcacaggcacaggcg
acgcgggcgcagaaggatcagcagatcgcctgcctgctgggccgctgcgagtgcctgctg
gagctgggcaagtacgagggctgtctggccgatgcctacaaggtgctcaccctgctggcc
gagcagacggagtgcctggccagtgtctcgcgcgcccgtcgctggctagtccacgctctc
ttcaagatgcacaagtatggggatgccgagatctttttgagcaagtggatcaacgagctg
agcggccagcaaatattctcggacatatccaagaccctagagcgctacaagtccatcatc
cagatgatcatgaacggccagcacaaggcccaggcgcagaagataccccacgcccggctg
gaggacgaaatggccatactggacaccaagctggaccactgggccaccaacaacctgccc
ctggacaagtacagcaagctgctcagcaataagggcctcaagaagcgcgaacagcagcag
cagcagcaacaacagcagcagcagcagaacggatcgggcagcggcagcggcagctatgcg
agcagcagcagcagcagcagcactggcagcagcagcaccatgtccagttccaacacaaat
ctgcacaagaccaacgacctgctggcggccatgaagctcacggctggcaagcaccagccg
gcctcgccggatggccccagccttgatgcggcctccggcggggatcaggcggcgccctcg
accacttgcagctactgcgccatcaacttcctgacgaggaacgagctgcggcagcactgc
cagaccgaggcccatcaaaaggtgatcatgagcgatgagggacgagactggaaatggcgg
ccgccaccccgcggctacaccctggacacgtacagtctgtgcgagacgttcagcgatgca
cacacctgccactacggggcccagtgtgtggaggcgcacggccaggacgagttgaacgag
tggaaggagcgcttcgagtaccggcgcatgcgggtgcagaaggcctgcgagaaggagctg
tacgggaagtcgtacacggagcaggtgctggagcgctggatccaggcgacggcgcccgag
cgggtgatgtgcgagcgagtgccggagatagaggccaagtgcgagcagcagctggtgacc
agcatcagctcgaagacctccaagcgcgagtggctcttccagctggagacaaagcagccg
ctcaaagcggtggccctgctgcaggacgcccatcgcaatcactttgccctcaagtcgatc
aagctgggcacggcctcagcttcagcccaggtggagctgaagtctgaccaggagtgggtg
gcggcagcagcagccgccgccgctgccgaagcagccagcggaagcgagccagcggaggga
gaggaggagtcgtcgccgccgccgcagcagcctgcgacgctcagccacgaagtaacagtc
gaatttcacacggaaatctatggaacgttccggcaggccatctgcttcgatgtggggcag
gagccgctgctggtgcgccacctgtgcgtggacgtgctgcccgtgaacgatgcggagaag
atcgaggagatcaagcgtgatataatcaacagctcggccacccgctgggacgtggccaac
acccagctgacgcgcttcgagacgaccatcggcacccacctgaagaccgaggcgtacctc
agcgatctggaccacgagcgggagctgctcgagcgctatccctgtccccgggcggccacc
ttcaccctcacccagtcgacgatcgtggagaagcgcctgacgcagaacaactaccggtcg
cgcatccacgagctgctctacgtggaggagatcgcccgctacgagcagatagcccgctac
aacgtccgcacgaagctgacagtggcctccaactacatactgacgcccgcggggatggcc
accagcacggccaagtactcgctggccggggagctgttcgccctgatgcggctgggcaag
gacatatcggaggacacctcgccgggacgcctcatcctctccaactgctgcagcgtgtac
atctcggcgccggaggagcccggcagaaaggtctctgcctcgtccgcctcctccggctcg
gagcagacgcggcctgtgtacgaggctctcatcgaggacaagggcaaaaacgtgatctac
ttgaagctgtcggccaagtgcgtggaggccatggccctgcaggcggacaccgagctggac
gtggacatccagttccagctgaaccgcatgccctactgcgagtggcacaacgccgtcgac
aagatcaccgacttccggctgatcttccccgccacggagctggagccgaacataccctgg
acgcccaagaagcagtgggccgacgcctgcgagccgaagctgaacgccaagcagcgggag
gcggtcaatgccatcaccaccgcgctgagcatcaagctgccgccgatcctcctgatcgga
ccgttcggcacgggcaagacctacacgctggcgcaggccatcaagcagctgctggcccag
ccagaggccaagatactcatctgcacgcactcgaactcggcggcggatctgtacatcaag
gagtacctgcacccgtggatcgaggagggcctggaggaggccacgccgctgcgcgtctac
taccacaagcgctggtcggcgacagtgaacggcgtcgtccagaagtactgcatcacggac
ggcgtcggcaacttcaagcgccccacgctggaggacatcatgcggcatcgcatcgtggtc
gtgacgctcagcatcagcatggagctggccacgctgggcctgcccaagggcctgttcacg
cacatctttctggacgaggcggcccaggccatggagtgcgaggccatcatgccgctggcc
ctggccaacgactcgacgcgcatcgtcctggccggagaccacatgcagatgagccccgag
ctcttctcggcctttgccaaggagcgcaagctgcacatctcgctgctggagcggctctac
gaccactacccctcgaacttcccctgcaagatcctgctctgcgagaactaccgcgcccac
gaggccatcatccgcttcacctcggagctcttctacgagcagaagctggtggcctccggc
aagcagccgcgccacgagcgcttctacccgctgaccttcttcaccacgcggggcgaggat
gtgcaggacaagaactcgaccgccttctacaacaatgccgaggtctacgaggtcgtcgag
cgggtctccgagctgcgcaagcgctggcccagcgcctggggcaagctcaacgacaccagc
atcggcatcatgaccccctacgcggaccaggtgttccgcattcgctccgagctgcgcaag
cgccgcatgggcggcatctctgtggagcgcgttctcaatgtccagggcaaacagtttcgt
gccgtcttcctgtccacggtgcggaccaggcgcacctgcatgccgcagggcagcggaccc
ggggttgccgccgccaccagcattggcgacgccgacacggactacggtttcctgagcaac
tcgaagctcctcaacacggccatcacgcgcgcccagtcgctcgtagcggtcgtgggcgat
cccgtcgccctctgctcgatcggccgctgccgcaaggtctgggagcgcttcatcgagatc
tgcgacgagcacaagtctctgttcggcctgacctggtccaacctgcgctcccagctggac
ggagtggagctgaaacgcggctacgtgctcaaccccttggccccggagttcgttccgcgc
gccctccagccggaggcctatctgcgggaccaggcggccctctatctgaacggaccccag
cacggacacggcacccacgggccgccgggtcctccggcccactatgccagcgcggccggg
atgttgggacccggaccggctgccgctcaccagatgaaccaaatggccgctgccatggcc
gcaaaccagcagctctcccacatgtactccacccacatggcggccatgatggccgcagcc
gccgccgtgggcgggggcaaggctgctaacgggcccggtccgggtccaggtcctcctccc
cactatggtggaggggggcacatgggcatgcggggaccgccgcccaatggtgcgccccag
ccgccgcatctgcggggaatgcccggacccgggccgcctggaccacccccgccgggcgca
ggtggacctccaccgccgccctacaaccagtacgcaaccatgcagcactggcgtccgccc
attgcaccgcagcagcagccgggcggacagggccaaggacaagggccccagccgcagaat
cccaatgccagtctctgggggccgccgccgcagacgaatccgtggagcgtgctgcccccg
aacaagcagcagcagcagccaccggtgactgctccgggacgagggcccggaccgggtccg
ggatccctgcaaccgcccccaccaaatgcgaatccctcgctgccattgcgcggcggaagc
gtgccaccgccgccacccaatgcgccgcccgctgcccagctgctgcgcaatcccagcgaa
ctgggctacttggccaagaagacactctacaaccatggccaggcgcagcctccgccgcca
ccgccccaccacctgtacgggccgccgccgccgcagcagcaggcgccgccgccaatgcag
ggcatgcagaggggcagcagcgtgcccaacgggcccatgagccccatggagaacgggccg
ccgctgccctacctgaggcacaatggcagcggatacaacagctacgacaagccgctggtg
ccgccccagcagcaacagcagcagcagcagccgcccttcatgtacggagcgaagcagcca
tcccccagctcgctgcgctttggccctccctcgcacgacctgctgcccccgaatgtgagc
atctacgagatggccttcaaccccaaggaggagcagtacaagtggtacctcaagctcctc
gagaccgtcggccaggagggggccaacaagttcgcggacatgctgcgccaggtgatggtc
accctgcagcagcagcagcagcaacagcagcagcagcagggccaccagcagcagctcaag
cagccgccccaccagcagatggtgaacaatccgatgctgaacaatccccatgtgatgggc
ggtggcggcggcggaggcggccagggccagaggccgcaatatcccatgatgtatccccag
aaccagccgcagcagccgctccagccacagtccgtggaggcctcgccgccgctggagaac
ttcaatcaccaaatcgacttggtctttaactcgatcatgaacggagccaacgacattgcc
cagcccatactgcgggacgtgctgggcatggtggccggcacggccagtgcccccggcgcg
ggaccttctctaaccaatggattgaatgccctcgagctgcagcagcagcagcagcaacaa
cagcagcagcagcagagtcgcctctttgccatcatgcagcagcagcagcaacaacagcag
cagcaggcgaagataccgcctggcccgggaccgggtctgtatgccgggcatctagctggc
gggccgccacagggaggagggccaggaccgggaccgggaccaggccctggacctggacca
catcagcctccgcccaatagcagcgccaacaactccaactttatggctgtcaatcctctg
ctcaacgacaagccctacaacaaccagatgaacatgcacaacaacgtgggaccgaacaac
gctggagtgggcgttggagtgggcgtgggagtggctggagttcccggcaccaatggcctg
ctgagcaatgggaactcggtgccgctctaccgacgccaggccctgaccggcaatggcatt
ggcattggcattggccatggcatcgggaacagctacaacaacatgcccggcctggacacg
ggcaccaatctgattgaggccctgttccacgccaacaacgccgtggcggatcactctgtg
aagtcgtccgaccatgtgcagggcctgctgtacaacaatttcagtgcgctaaagagcggc
cacgaaatggacctgttccagtcgatgccgctgccagtgccacactcggaggccaacaat
caccaccatcagcaccagcagcatcagcaggcctcttccgcggccaccacctatgcggcg
gtgttgagtcagggcccacaggcggcatcgtcggctggtggagcgggtcaaggccaagga
cagggccagaatcagaatcaagggcaggggcaggcccagtcacagtcacaggcgcagtcg
cagtcgcagcccgccccggcggccaaatcctcgcaggcgggcggcgagctggagaaggat
ccgttcgcggccatacgggaactgggccaggccacaaccggattctacaactattttcag
tga
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