Drosophila pseudoobscura: 4815797
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Entry
4815797 CDS
T01032
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
dpo
Drosophila pseudoobscura
Pathway
dpo03008
Ribosome biogenesis in eukaryotes
dpo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
4815797
09123 Folding, sorting and degradation
03018 RNA degradation
4815797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpo03019
]
4815797
03009 Ribosome biogenesis [BR:
dpo03009
]
4815797
03016 Transfer RNA biogenesis [BR:
dpo03016
]
4815797
03036 Chromosome and associated proteins [BR:
dpo03036
]
4815797
Messenger RNA biogenesis [BR:
dpo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
4815797
mRNA degradation factors
5'-3' decay
5' exonucleases
4815797
Ribosome biogenesis [BR:
dpo03009
]
Eukaryotic type
Pre-60S particles
RNases
4815797
Transfer RNA biogenesis [BR:
dpo03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
4815797
Chromosome and associated proteins [BR:
dpo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
4815797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
4815797
NCBI-ProteinID:
XP_033238500
UniProt:
A0A6I8W551
LinkDB
All DBs
Position
X:complement(5318102..5331704)
Genome browser
AA seq
1695 aa
AA seq
DB search
MGVPKFFRYISERYPCLSELAREHSIPEFDNLYLDMNGIVHNCSHPDDNNIHFHLEEQQI
FQDIFNYVDKLFYLIKPQKLFFLAVDGVAPRAKMNQQRSRRFRSAREAEMLEAKALQRGE
RREHERFDSNCITPGTDFMERLQQGLRCFLKTKISTDPLWQKCSVILSGQETPGEGEHKI
MDYIRYMKAQPNFDPNTRHCLYGLDADLIILGLCTHELHFVVLREEVKFGRNVKRASVEE
TRFFLLHLGLLREYLELEFHQLNTAQHKLDVAQLIDDWVLMGFMVGNDFIPHLPCLHISS
NALPLLYKTYIRIYHSLGGNINEHGKLNLQRLQIFMTALSEVELEQYKEHADDLKYANGN
TEAFDIDVGDIDSSKDYDSDLKALIDDSTQLYNDDSDEDLSDEEAGVLKDFQNYKRNYYR
NKFNLSSRPPNQLIEELGHHYVTALQWILDYYYRGVQSWDWYYPFHYAPFISDLNNIATV
QIKFQLGTPFLPFEQLLGVLPAASFKLLPNAYHDLMLKPTSPLAEFYPTDFKSDLNGKKH
DWEAVVLIPFIDECLLLSVMRPCEAHLSTAERARNRHGPMYQYDYSPEDVGSMPALPPLK
ALQHVNCTEVARWAGEIALNLPHSVCVEMPNAARHVFFPGFPTMKHLAFNFELRHGRVKV
FEQVSRNQNMVLMPRKQATEDSLEAVAARYLEQVVHIGWPHLIMAKVVKVATRDQCIDKD
GRSSNESRRFDAECKALQEHFSTRMGIQFENYEVLVYARTYAGSSVDFGAKGTVHMKDAW
SSSITEYPAQGVVGELSVKKNMRQQFSKIEQLFPAGSLVFFIGSPYYGSEGTVLDPLLVY
SCGRIQVCIRVHPEPNLDEARLEQEERDKDYMNTFDVCRQLNINGRALGRLTGTFWVVLG
PRREKMENVAKHNIGLQLKFPRQNEERAGYCRRLNNQWFYSSLAVELMHMYCERFPEVVS
YFAVSNDRNEYFFEQDIYPDAVGQHHIEDLANWVRQQPHMKVDRISCGSKTVCKETVELL
MGAVEELRSMPVKDVKLQVKPHLLIKPNVTLPDVYKSRRPVRLFDRVVIVRTIYMVPVGI
KGTVIGVHPVTDPNPVRLECVHAVDTFCEVLFDKAVPNCNDIHGIAEERVYKIPENALVV
ICLNENGQNQQSGLQFEKTRQSYHQPNQTNAPRMEKREKQNRQQQQQPQQQQQQQQQQQH
QPQKQQQQQKQQKQQQQQQHVQQQQNQQHQQQQKQQQQHQQQHQQQQQQQQHVQQQQNYQ
QQQHLQQQYLQQLQQQQEQQQQQQHKQLLETNGRYLTAAGKAWDEITMKTEISDDFVKPR
SVLPGRSNQPITTQALSQHHHSALPTNSYLEDAQESWHQSSARHQGGNVGAAPIPTTISP
ALVVSDKQTLALKSLLGMNKEQQPLDQVTLTSLQQQQQPPKSQSQIVQRPMPGQMPKLPQ
PPVFWQKEAQQQAQQAQQAQQAQQAQQAIHIQTQQWFRSMQTQEVDLHQGLPRQRSNPPQ
SQYRHFQQMPPPHSYQMPYKNGNQSSYNNSQEHEVYNNNNTRTTLEQQHQQYQTQYPQHT
QYPQHPHQQQDIASSRPRYSSIQDFVPIQAYRPKVSQRSQPIGQIETETPSSTTAGEMNS
RPSHQEEVPNEATVELMQTLNIQPSTSQAERSTAVAAKVEADADPGPGSTPAQLKARKQR
VPRIGAKFDLDYIIH
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccgaagtttttccgctatatcagcgaaaggtatccgtgcctgagcgaattg
gcgcgcgagcatagcatccctgagttcgacaacctatacctggacatgaatggcatcgtc
cacaactgctcccatccggatgacaacaacatacactttcacttggaggagcagcagata
tttcaggacattttcaactatgtggacaagctgttctacctgattaagccacagaaactt
tttttcctggctgtggatggtgttgccccgcgggccaaaatgaatcagcaaagaagccgc
cgcttccgctctgcccgcgaggctgaaatgctggaggccaaggcgctgcaaagaggagaa
cgtcgtgagcacgagcgcttcgatagtaactgcatcactccaggcactgatttcatggag
cggctgcaacagggtctccgctgtttcctcaagacaaagatctccacagacccactctgg
cagaagtgctctgtgatcctcagcggacaggagacgcccggcgagggtgaacacaagatt
atggactacatacgctatatgaaggcccagcccaactttgaccccaacaccagacactgc
ttatacggcctggacgcggatctcatcatcctgggattgtgcacacacgagctgcacttt
gtggttctacgcgaagaggtcaagtttggacgaaatgtaaagcgggcttccgtagaggag
acgcgcttcttcctcttgcatctcggcctgcttcgggaatatctcgagctggagttccac
cagctgaacaccgctcaacataagctagatgtggcccagctaatcgacgactgggtcctc
atgggcttcatggtcggcaacgacttcattcctcatctgccctgcctgcacatctcctcc
aatgccctgccgctgttgtacaagacgtacatacgcatttaccattcccttggtggcaac
atcaacgagcacggcaagctgaacctgcagcgtctgcagatcttcatgacggctctcagc
gaggtagagctggagcagtacaaggagcacgccgacgatctaaagtacgcgaacggcaat
acagaggccttcgacatagacgttggagacatagactcctccaaagactacgattccgac
ctgaaagccctgatcgatgacagcacacagctctacaatgacgacagcgatgaggatctg
agcgacgaagaggctggcgtgctaaaagacttccaaaactacaagcgtaactattaccgc
aacaagttcaatctcagctcgcggccaccgaatcagctgatcgaagagttgggccaccac
tatgtgactgcgctccagtggatcctggactattattaccggggcgtgcagtcgtgggac
tggtactaccccttccactatgcccccttcatcagcgacctcaacaatatcgcgactgtc
cagatcaagttccagctagggacgccttttcttcccttcgaacagttgcttggtgttttg
ccggcggccagtttcaagctccttcccaatgcctaccacgacctcatgctgaaaccgacc
agccccttggcggaattttaccccacggactttaagagcgatctcaatggcaagaaacac
gactgggaggccgtcgtactcatacccttcatagacgagtgcctactgctcagcgtgatg
cggccgtgcgaagcccatctgtcgaccgcagagagagcccgaaacaggcacggaccgatg
taccagtacgactacagtcccgaggatgtgggctcgatgccagccctgcccccgctgaag
gctctgcagcacgtgaactgcacagaagtggcccggtgggccggagagattgccctgaat
ctcccccacagcgtttgtgttgaaatgccgaatgcagcgcgccacgtcttcttccctggc
tttcccactatgaagcatctggccttcaattttgagctgcgccacggccgggtgaaagtc
ttcgagcaagtcagccgcaaccagaatatggtgctgatgccacgaaagcaagcgacagag
gattccttggaggcagtggctgcacgctacttggaacaggtggtgcacattggatggccc
catcttataatggccaaggttgtgaaggtcgccacgcgtgatcagtgcatcgacaaggat
gggaggtcctcgaacgagtcgcgtcgcttcgatgcggagtgcaaggcgttgcaagaacac
ttcagtacgcgtatggggatccagttcgaaaactacgaggttctcgtgtacgcgcgtacc
tacgcgggaagctccgtcgatttcggcgccaagggcaccgtgcacatgaaggatgcctgg
agcagcagtattacggaatacccggctcagggcgtggtaggcgagctgtctgtgaagaag
aacatgcgccagcagttctccaaaatagagcaactctttccagccggcagcttggtattt
ttcatcggcagtccttattacggcagcgagggcactgtgctggacccactgctcgtctat
agctgtggacgcatccaggtctgtattcgggttcatcccgagccgaacctggacgaggcg
cgtctagagcaggaggaacgcgacaaggactatatgaacaccttcgacgtctgccggcag
ctgaacatcaatggaagagccctgggccgtctgaccggcaccttctgggtagtgctggga
ccgcgccgcgaaaagatggagaacgtggccaagcacaacatcgggctgcagctgaagttt
ccccgccagaacgaggagcgggccggctactgccgtcgcctgaacaaccagtggttctac
tccagcctagccgtcgagctcatgcacatgtactgcgagcgcttccccgaggtggtcagc
tacttcgccgtcagcaacgacaggaacgagtactttttcgaacaggacatttacccggac
gccgtgggccaacaccatatcgaggatctggctaactgggtccgtcagcaaccgcacatg
aaggtggatcgcatctcctgtggctccaagacagtgtgcaaggagaccgtggaactgctg
atgggcgccgtcgaggagctgcgttcgatgcccgtgaaggatgtaaagctccaggtgaag
ccccacctcctcatcaagccaaatgtcacactgcccgatgtgtataagtcgcgtcgccca
gtgcgcctgttcgatcgcgtcgtcatcgtccgcaccatctacatggtgccggttggcatc
aagggcaccgtcatcggcgtccaccccgtcaccgaccccaatcctgtgcgactagagtgc
gttcatgccgtggacaccttctgcgaggtgctcttcgacaaggccgttcccaactgcaac
gacatccacggcatagccgaggagcgtgtttacaagataccagaaaatgccctcgtagtg
atttgtttgaatgaaaatggacaaaaccagcagtcaggcttgcagtttgagaaaacgcgc
cagagctatcatcaacccaaccaaacgaatgccccgcgcatggagaagcgagagaagcag
aatcggcagcaacagcagcagccgcagcaacagcaacagcagcagcagcagcagcagcat
cagccacaaaagcagcagcagcaacaaaagcagcaaaagcaacagcagcaacagcagcat
gtgcagcagcaacaaaatcagcagcaccagcaacagcaaaagcaacagcaacagcaccag
caacagcaccagcaacagcagcagcaacagcagcatgtgcagcagcaacaaaactatcag
caacagcagcatctgcagcagcagtatcttcagcagctacagcaacaacaggagcagcag
caacagcagcagcataaacagctgctggaaaccaacggccggtaccttacggcagcaggg
aaggcctgggatgaaatcacgatgaaaacggagatatccgatgattttgtcaagccgcgt
tccgtcctcccgggtagatctaaccagcccatcacaactcaagcactgtcgcagcatcac
cattctgcattgccaactaactcatacctggaggacgcacaggaaagttggcaccagagt
tctgctcgacaccagggaggcaatgttggcgcagccccaataccgaccacaatatcgcca
gcgctcgtggtgtcggataaacagactctggctctcaagtcgctgctgggcatgaataaa
gagcagcagccacttgatcaagtaactcttacatccttgcagcagcagcagcagccgccg
aaatctcagtcgcaaatagttcagcgacccatgcctggacaaatgcctaaactgccgcag
cctccggtcttttggcagaaggaggctcaacagcaagcacagcaagcacagcaggcacaa
caagcacaacaagcgcaacaggccatccacattcagacccaacagtggttcaggtctatg
cagacacaggaggtagatcttcatcagggcctcccacggcagcggtctaatccaccacag
tcacaataccggcacttccagcagatgccacccccccactcttatcaaatgccctacaaa
aacggaaaccaatcatcctataacaactcgcaggagcatgaagtctacaacaacaacaac
actcggacaacactggagcagcagcaccaacagtatcagacacagtatccccagcatacc
cagtatccccaacatccccaccaacagcaggatatagccagtagcagacctcgttactcg
tccatacaggactttgtgcccatacaggcatatcgtcccaaggtatcgcagcgctctcag
ccaattgggcaaatagagacggagacgccgtcgtcaacaacagccggagaaatgaactcc
cgccctagtcatcaggaagaagtaccaaacgaagcgactgtcgaactcatgcagacactg
aatattcagccatcgacatcacaagctgaacgtagcaccgccgtagctgcgaaggtcgaa
gctgatgccgatccaggtccaggatccactccagcccagttaaaggcgaggaaacagcga
gtgcctcgcattggtgcaaaattcgacttggattacattatccattga
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integrated database retrieval system
