Desulfotalea psychrophila: DP1929
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Entry
DP1929 CDS
T00192
Name
(GenBank) related to single-strand DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dps
Desulfotalea psychrophila
Pathway
dps03410
Base excision repair
dps03430
Mismatch repair
dps03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DP1929
03430 Mismatch repair
DP1929
03440 Homologous recombination
DP1929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dps03400
]
DP1929
DNA repair and recombination proteins [BR:
dps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DP1929
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DP1929
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DP1929
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
CAG36658
UniProt:
Q6ALW7
LinkDB
All DBs
Position
complement(2190052..2191710)
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AA seq
552 aa
AA seq
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MSRKNPIEQILSLRGYQEAQAIEEFLSPRLSSLPHPFTMLGMKEAVAEVLRAIDEGLPIL
IWGDYDVDGTTGTSILVNFFERIDVKVYWHIPSRLTEGYGLNLTYFQNLPWAEEHFLLIT
VDCGISNATEIEAIKKRGGRVIVTDHHQLPKRVPNCTVLNPSNEKCPFYGTSLAGVGVAF
YLVAGVRNALVSGELNGKYSQSTPNLKSFLGFVAFGTLADVVPLTPVNRLLVKAGVESFA
RTEFIGLQALLESSDIADGSVTSDDIGFNLAPKVNAAGRYGVAHQVVELLTSKEAEPAYK
IAKTLTKLNNDRKLLCKENMAEIETLLHIETIKADACIIVEGDFFEGILGILASRLVDRF
HLPAIVFSRAADGDLKGSARSIEEINILDVITETSFLLKKFGGHKMAAGMSMSPLNFAAF
RSAFVENLQRAEVKEIKQESRYELDASVEQVFNPDSLALYQKMEPFGPGNPQPTFYDAHA
LIVAARPVGQSKEHLQLTIRGKYGDNIKAIGFNLGEKGRNVIAGSTVKIIFTPTINRFKE
RVSWQARILDIL
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
gtgtccagaaaaaatccaatcgaacagatcctctctctgcgaggataccaagaggcgcag
gcaatagaagaatttctctccccccggctctcctctctgccacacccttttaccatgctg
ggcatgaaggaggccgtggcagaagttctccgggccatagatgaaggtctgcccattctt
atctggggtgactatgatgtcgatggcacgacggggacctcgattctggtaaattttttt
gagaggatagacgttaaggtctactggcatatccccagtaggcttaccgagggctacggt
ctaaaccttacctattttcaaaatcttccttgggcggaggagcactttcttctcattacc
gtagattgcggtatctctaacgctactgaaatagaggccataaagaagaggggcggcaga
gtaattgtcaccgatcaccaccaactacccaaaagagttcccaactgtacagtattaaat
cccagtaacgaaaaatgccccttttatgggacatctctggcaggggttggggttgccttc
tatctggttgcaggtgttcgcaatgcccttgtctcaggtgagctgaatggcaaatacagc
caatctacgccaaatttaaaatcctttctcggctttgtcgcctttggcaccctggccgat
gttgtccccctcacccctgtaaatcggctcctggttaaggccggggtagagtcatttgcc
cgcacagaatttattggcctacaggcattgctagagtcatctgacattgccgatggctcg
gtaacctcagatgatatcggctttaatctggcacccaaggtcaatgccgcgggcaggtat
ggtgtggcccatcaagttgtagagttattgacaagtaaagaggcagaaccggcctataaa
attgccaaaacgctgaccaagctcaacaacgacaggaagttactctgtaaagaaaatatg
gctgagatagagacacttctccatatagagacgatcaaggcagatgcttgcattattgtt
gagggtgacttttttgaaggaattttagggatactggcatccaggctggtggatcgtttt
catctaccggcaatagttttttctcgggctgcggatggcgaccttaagggttcagcccgc
tccatcgaggaaattaatattctcgatgtaataaccgagacctcttttctgttaaaaaaa
tttggtggtcataaaatggccgccggcatgagcatgtccccgctcaattttgccgccttc
aggtcggcatttgtagagaatctacagagggcagaggtgaaggagattaagcaggaaagc
agatatgagcttgacgcctccgttgagcaggttttcaacccggacagcttagccctctac
caaaaaatggaaccattcggtccaggaaatcctcaaccaacattttatgatgcccacgcc
cttatcgtcgcagcaagacccgtaggtcagagtaaagagcatctgcagctgacaatcaga
gggaaatacggcgacaatataaaggccatcggctttaaccttggtgaaaagggacggaac
gtcattgccggctcaacggtgaaaataatttttactcctaccattaatcgttttaaagag
agggtcagctggcaggctcgtatcctcgatatcttataa
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