Dryobates pubescens (Downy woodpecker): 104303590
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Entry
104303590 CDS
T08526
Symbol
USP9X
Name
(RefSeq) LOW QUALITY PROTEIN: probable ubiquitin carboxyl-terminal hydrolase FAF-X
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
dpub01002
]
104303590 (USP9X)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dpub04121
]
104303590 (USP9X)
Enzymes [BR:
dpub01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
104303590 (USP9X)
Peptidases and inhibitors [BR:
dpub01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
104303590 (USP9X)
Ubiquitin system [BR:
dpub04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
104303590 (USP9X)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3517
UCH
UCH_1
FAST_1
Vps23_core
RasGEF_N
Motif
Other DBs
NCBI-GeneID:
104303590
NCBI-ProteinID:
XP_009902538
LinkDB
All DBs
Position
Unknown
AA seq
2552 aa
AA seq
DB search
MTATTRGSPVGGNDSQGQAPDGQSQPPLQQNQTSSPDSSNENSPATPPDEQGQGDAPPQL
EDEEPAFPHTDLAKLDDMINRPRWVVPVLPKGELEVLLEAAIDLSKKGLDVKSEACQRFF
RDGLTISFTKILTDEAVSGWKFEIHRCIINNTHRLVELCVAKLSQDWFPLLELLAMALNP
HCKFHLYNGTRPSETVPAGVQLAEDELYARPPDPRSPKGWLVDLINKFGTLNGFQILHDR
FMSGSALNVQIIAALIKPFGQCYEFLTLHTVKKYFLPIIEMVPQFLENLTDDELKKEAKN
EAKNDALSMIIKSLKNLASRVPGQEETVKNLEIFRLKMILRLLQISSFNGKMNALNEVNK
VISSVSYYTHRHGNPEEEEWLTAERMAEWIQQNNILSIVLRDSLHQPQYVEKLEKILRFV
IKEKALTLQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDHLFDCFKASWTNAS
KKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDQALSAHIKILDYSC
SQDRDTQKIQWIDRFIEELRTNDKWVIPXLKQIREICSLFGEAPQNLSQTQRSPHVFYRH
DLINQLQHNHALVTLVAENLSAYMESMRQYAKEHGEYDPQTVRPGSRYSHVQEVQERLNF
LRFLLKDGQLWLCAPQAKQIWKCLAENAVYLCDREACFKWYSKLMGDEPDLDPDINKDFF
ENNVLQLDPSLLTENGMKCFERFFKAVNCREGKLIAKRRAYMMDDLELIGLDYLWRVVIQ
GNDDIANRAIDLLKEIYTNLGPRLQVNQVVIHEDFIQSCFDRLKASYDTLCVLDGDKDSI
NCARQEAIRMVRVLTVLREYINECDSDYHEERTILPMSRAFRGKHITLVVRFPNQGRQVE
DLDIWSHTNDTIGQVRRCILNRIKANSAHTKVELFIGGELVDPADDRKLIGQLNLKDKTL
ITAKLTQINSNMPSSPDSSSDSSTGSPGNHGNHYSDGPNPEVESCLPGVIMSLHPRYISF
LWQVADLGSSLNMPPLRDGARVLMKLMPPDNTTVEKLRAICLDHAKLGESSLSPSLDSLF
FGPSASQVLYLTEVVYALLMPASAPLGEDASDFQYNFLKSGGLPLVLSMLTRNNFLPNAD
METRRGAYLNALKIAKLLLTAIGYGHVRAVAEACQPVVEGTSSISPINQATHDQAVVLQN
ALQNIPNPTSECMLRNVAIRLAQQISDEASKYIPDICVIRAVQKIVWASGCGSVQLVFSS
NEEISKIYEKTNAGNEPDMEDEQVCCEALEVMTLCFALIPTALDALSKEKAWQTFIIDLL
LHCHSKTVRQMAQEQFFLMATRCCMGQRPLLFFITLLFTVLGSTARERAKHSGDYFTLLR
HLLNYAYNSSINVPNAEVLLNNEIDWLKRIRDEVKRTGETGVEETILEGHLGVTKELLAF
QAPEKKYHIGCEKGGANLIKELIDDFIFPASNVYLQYMRNGELPAEQAIPVCSSPATINA
GFELLVALAVGCVRNLKQIVDTLTEMYYIGTAITTCEALTEWEYLPPVGPRPPKGFVGLK
NAGATCYMNSVIQQLYMIPAIRNGILAIEGTGSDVDDDMSGDEKQDNESNVDPRDDVFGY
PHQYEDKPVLSKTEDRKEYNIGVLRHLQVIFGHLAASRLQYYVPRGFWKQFRLWGEPVNL
REQHDALEFFNSLVDSLDEALKALGHPAMLSKVLGGSFADQKICQGCPHRYECEESFTTL
NVDIRNHQNLLDSLEQYVKGDLLEGANAYHCEKCNKKVDTVKRLLIKKLPPVLAIQLKRF
DYDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDDVNPENQIIQNEQSENEHSGST
KYRLVGVLVHSGQASGGHYYSYIIQRNGGDGEKNRWYKFDDGDVTECKMDDDEEMKNQCF
GGEYMGEVFDHMMKRMSYRRQKRWWNAYILFYERMDTIDKDNELIKYISELAITTKPHQI
KMPSAIERSVRKQNVQFMHNRMQYSLEYFQFIKKLLTCNSVYLNPPPGQDHLLPDAEEIT
MISIQLAARFLFTTGFHTKKIVRGPASDWYDALCILLRHSKNVRFWFAHNVLFNVSNRFS
EYLLECPSAEVRGAFAKLIVFIAHFSLQDGPCPSPFASPGPSSQTYDNLSLSDHLLRAVL
NLLRREVSEHGRHLQQYFNLFVMYANLGVAEKTQLLKLNVPATFMLVALDEGPGPPIKYQ
YAELGKLYTVVSQLIRCCNVSSRMQSSINGNPPLGNPYGDPNLSQPIMALQQNVADILFV
RTSYVKKIIEDCSNSEETIKLLRFCCWENPQFSSTVLSELLWQVAYSYTYELRPYLDLLL
QILLIEDSWQTHRIHNALKGIPDDRDGLFDTIQRSKNHYQKRAYQCIKCMVALFTNCAVA
YQILQSNGDLKRKWTWAVEWLGDELERRPYTGNPQYTYNNWSPPIQSNETSNGYFLERSH
SARVTLAKACELCPEEEPDDPDAPDEHESSPPEDAPLYPHSPGSQYQQNNHVHGQPYTGP
AAHHMNNPQRTGQRAQENYEGSEEVSPPQTKD
NT seq
7659 nt
NT seq
+upstream
nt +downstream
nt
atgacagccacgactcgtggctctccggtaggagggaatgatagccagggccaggctcct
gatggacagtcccagcctcccctccagcagaatcagacttcttcacctgattcttccaat
gagaactctccagctaccccgcctgatgagcagggccaaggagatgctccaccccagctc
gaagatgaggagcctgcatttccacacacagacctggcaaagttggatgacatgatcaac
aggcctcgatgggttgttccagtattgccgaaaggggaattagaagttcttctagaagct
gctattgacctgagtaaaaaaggccttgatgtcaaaagtgaagcatgccagcgatttttt
cgagatgggttaacaatatctttcacaaaaatccttacagatgaagcagtgagtggctgg
aagtttgagattcatagatgtattataaacaacacccatcgactagtggaactctgtgtg
gccaagctgtcccaagattggtttccccttcttgaacttcttgccatggccttaaatcct
cattgcaaattccatctatacaatggtactcggccctcagaaacagttcctgcaggagtc
cagcttgctgaggatgaactttatgcccgtcctcctgacccacgatcaccaaagggttgg
ctagtagatctcatcaacaaattcggcacattaaatggatttcagatcttgcatgatcgc
ttcatgagtggatcagcattgaatgttcagataattgcagctcttattaagccatttgga
caatgttacgaatttctaacattacatacagtgaagaaatatttccttccaattatagaa
atggttccacaatttttagaaaatttaactgatgatgaactgaaaaaagaagcaaagaac
gaagccaaaaatgatgctctgtcaatgataatcaaatctttgaagaacttagcttcaaga
gttccaggacaagaagaaactgtaaaaaacttagaaatatttaggttaaaaatgatactt
aggttgttacaaatttcttctttcaatggtaaaatgaatgcactaaatgaagtaaacaaa
gtaatatccagtgtgtcatattatactcatcgtcatggtaatcctgaagaggaggaatgg
cttacagctgaaagaatggcagaatggatccagcagaataatattttatcaattgtactg
agagacagtcttcatcaacctcaatacgtagagaagttagagaagattcttcgttttgtc
atcaaagagaaagccctcactttgcaggatcttgacaacatttgggctgcacaggcagga
aaacatgaagccatcgtgaaaaatgtacatgatctccttgcaaaattagcttgggatttc
tcacctgaacagcttgatcacctctttgattgttttaaggcaagttggacaaatgcgagc
aagaaacagcgtgagaaactgcttgagttaattcgtcgtcttgcagaggatgacaaggat
ggtgtaatggcacacaaagtgctgaaccttttgtggaatttggctcatagtgatgacgta
ccagttgatatcatggaccaggctcttagcgctcatattaaaatcttagattacagctgt
tcacaggatcgagatacacaaaagatccagtggatagatcgttttatagaagagcttcgc
acaaatgacaaatgggtcattcctngcctgaaacaaattagagaaatttgcagcttgttt
ggtgaggcaccacaaaacttaagtcaaactcagcgaagtccccatgtgttttaccgacat
gacttaatcaatcagcttcagcacaatcatgccctagttacattggttgcagaaaatctc
tctgcctatatggaaagcatgaggcagtatgctaaagagcatggcgaatatgatcctcaa
actgtaagaccaggaagcagatacagtcacgtgcaggaagtacaggagcgacttaacttc
ttgcgatttttattgaaggatggtcagctgtggctctgtgcccctcaggcgaagcaaata
tggaagtgtttagctgaaaatgcggtttatctttgtgatcgcgaagcctgttttaaatgg
tattccaaactaatgggggatgaaccagacttagaccctgacattaataaggacttcttt
gaaaataatgtacttcagctggatccttccctattaacagaaaatggaatgaaatgtttt
gaacgtttcttcaaagctgtgaactgtcgagaaggaaagctaatagcaaagagacgagcc
tatatgatggatgatctggaattaataggattagactacctttggagggttgtaattcag
ggaaatgatgacatcgcaaacagagcaatagatcttcttaaggagatctacacaaatctt
ggcccaaggttacaagttaatcaggtagtgattcatgaagacttcattcagtcctgtttt
gatcgtctaaaagcctcttatgatacattatgtgtgttggatggagacaaagacagtatc
aattgtgcaagacaagaagcaatacgaatggtgagagtattgactgttttaagagagtat
ataaatgaatgtgacagtgactaccatgaagagagaactattctacctatgtcaagagct
ttccgtggtaaacatatcacactggtagttcgttttcccaaccaaggccgacaggtggag
gacctggatatttggtcacacacaaacgacacgattggccaagtgcggcgttgtattctc
aatcgtattaaagccaatagcgcgcacacaaaagtagagctgttcattggtggcgagctg
gtggaccctgcagatgacagaaagttaattgggcagttgaatctcaaagataaaacgcta
attacggctaaacttacacagataaattctaatatgccctcaagtccagatagttcttct
gattcttcaactggttctccaggcaaccatggcaatcattacagtgatgggccaaatcca
gaagttgaaagctgtttgcctggagtgatcatgtcactgcatcctcgatacatctccttt
ctttggcaagttgcagacttgggcagtagcctaaatatgccacctcttagagacggagca
cgtgttcttatgaagctcatgccaccagataacactacggttgagaaattaagagctatt
tgtttagatcatgcaaaactcggggaaagcagccttagtccatctcttgattctctgttc
tttggtccttctgcctcacaagtgctgtatctaacagaggtagtttatgccttgttaatg
cctgccagtgcacctctgggagaagatgccagtgactttcaatacaacttcttaaaaagt
ggtggtttgcctcttgtattgagcatgctgactagaaataacttcctgccaaatgcagat
atggaaactcgaaggggtgcctaccttaatgctctaaaaatagccaaattattgctaaca
gcaattggatatggccatgttcgagctgtggcagaagcttgtcagccagttgtggaaggc
acaagttccatttcaccgataaaccaggctacacatgaccaggcagtggtgctacaaaat
gccctacaaaacattcctaatccaacttcagaatgcatgctaagaaatgtagcaatacgt
cttgcacagcaaatatctgacgaggcttcaaaatacatccctgatatctgcgttattagg
gcagtacagaaaatcgtttgggcatcaggttgtgggtcagttcagctggttttcagctca
aatgaggaaatcagtaaaatctatgaaaagacaaatgcaggaaatgaaccagacatggaa
gatgaacaagtttgctgtgaagcattggaggtgatgaccctgtgttttgctttgattcca
acagcactggatgcactcagtaaagaaaaggcatggcagacatttatcattgatttgcta
ctgcactgtcacagcaaaactgttcgtcagatggcacaggagcaattctttttgatggct
accaggtgctgcatgggacagagacctcttcttttcttcattaccctgctgtttactgtt
ctagggagtactgcaagagagagagctaagcattctggagactacttcactctcttaagg
catcttcttaactatgcttacaacagtagcattaatgttccaaatgctgaagttcttctc
aataatgaaattgactggcttaagaggattagggatgaagtaaaaagaacaggggaaaca
ggtgttgaagaaactatcttagagggtcaccttggagtcacaaaagagttgttagcattc
caggcacctgagaagaaataccatattggttgtgaaaaaggaggtgctaatctcattaaa
gagttgatagatgatttcatctttccagcttccaatgtttatctacaatacatgagaaat
ggagaattgcctgctgagcaggccataccagtctgtagttcaccggctactattaatgct
ggctttgagcttctagttgcactagcagttggatgtgtgcgaaatctcaaacagatagta
gacaccttgactgaaatgtattacataggtacagcaatcactacttgtgaagcgcttaca
gaatgggaatatctaccacctgttgggcctcgaccaccaaagggatttgtaggactgaaa
aatgctggtgccacttgttacatgaattctgtcattcagcagctgtacatgattccagcc
atcaggaatgggattcttgcaattgaaggcacaggcagtgatgtagatgatgacatgtct
ggggatgaaaagcaggacaatgagagcaacgttgacccacgggacgatgtgtttggttac
ccacatcagtatgaagacaaaccagtactgagtaaaacagaagacagaaaagagtacaat
attggagttctgaggcacctccaagtaatttttggtcatctagcagcttccaggctacag
tactatgtaccaagagggttttggaaacaatttagactttggggtgaacctgtaaatcta
cgtgaacaacatgatgctttagaatttttcaattccttggtggacagtttagatgaagct
ttaaaagctttgggccatccagcaatgctgagtaaagttttaggagggtcctttgctgat
cagaagatttgtcaaggatgcccacatcggtacgaatgcgaggaatccttcacaactctg
aatgtagatataagaaatcaccaaaaccttttggattctttggaacagtacgtcaaggga
gatttattggaaggtgcaaatgcatatcattgtgaaaaatgcaacaaaaaggttgataca
gtgaaacgcttgttgattaagaagttgcctccggttcttgcaatccagttgaaacgattt
gattatgactgggaaagggaatgtgcaatcaaattcaatgattattttgagtttccacga
gagctggacatggagccttacacagtggcaggtgtagcgaaattggaaggagatgatgta
aaccctgaaaatcagattatacaaaacgaacagtctgaaaacgagcactctgggagcaca
aaatacaggcttgtcggtgtgctcgtgcacagtggccaggccagcggaggacattattac
tcttacatcatccagaggaatgggggagatggtgagaagaatcgatggtataaattcgat
gatggtgatgtgactgagtgtaaaatggacgatgacgaagagatgaagaaccagtgtttt
ggtggagagtacatgggagaagtgtttgatcacatgatgaagcgtatgtcctacagacgc
cagaagaggtggtggaacgcttacattcttttttacgagcgtatggacacaatagacaaa
gacaatgaactaataaaatacatttcagaacttgccatcaccactaaaccccatcagatt
aaaatgccatcagccatcgaacgaagcgtacggaagcagaacgtgcagttcatgcataat
cgtatgcagtacagcctagaatatttccagttcataaagaaattgcttacttgtaatagt
gtctacttaaaccctcctccaggacaagatcatctgttgcctgatgcagaagaaataacg
atgattagtattcagcttgctgctagatttctcttcaccacaggatttcatacgaagaaa
atagtccgtggccctgctagtgattggtatgatgcattatgcatcctccttcgtcacagc
aagaatgtacgcttttggtttgcacacaacgtcctttttaatgtttcaaaccgcttctct
gagtaccttttggaatgccctagtgcagaagtgagaggtgcatttgcaaaacttatagta
tttattgcacatttttcattgcaagatggaccgtgtccttcaccttttgcctctcctgga
ccttccagtcagacttatgataacttaagtttaagtgatcacttactgagagcggtacta
aatcttctacgaagggaagtatctgaacatgggcgccatttgcaacagtatttcaatctg
tttgtgatgtatgccaatctaggtgtagcagagaagacacaacttctgaaactaaatgtt
cctgcaactttcatgcttgtggctctggatgagggtccaggtcctccaattaaataccag
tatgctgaactggggaaactatacactgttgtgtcacagctgatccgttgctgcaatgtg
tcatcccggatgcagtcttctattaatggtaatcccccacttggcaacccttacggtgat
cctaatttatctcaacctataatggcacttcagcagaacgtagcagacattttgtttgtg
agaactagttacgtgaagaaaattattgaagattgcagcaactctgaagagaccattaag
ctgcttcgattctgctgttgggagaatcctcagttttcttccactgtcctcagtgaactt
ctttggcaggttgcatactcatatacatacgagcttcgaccttacttggatctgcttctg
caaatcctattaattgaggactcttggcaaactcacaggattcacaatgcacttaaggga
atcccagatgacagggatggactattcgacaccattcaacgctctaagaatcattatcag
aaaagagcttaccagtgtataaagtgcatggtagctctcttcaccaactgtgctgtagcc
taccagattcttcagagcaatggcgacttgaaaagaaaatggacctgggcagtagaatgg
cttggagacgagctcgagcgtaggccatacactggcaatccccagtacacctataacaat
tggtctccaccaatacaaagcaatgaaacatcaaacggctacttcctagagaggtcgcac
agtgctagggtgactcttgcaaaagcctgtgaactctgcccagaggaggaaccagatgat
cctgatgccccagatgaacatgagtcttctccacctgaagatgccccactgtatccccat
tcacctggttcccaatatcaacagaataaccacgtgcatggacagccatatacaggcccg
gcagcacatcatatgaacaaccctcagcgaactggccaacgagcacaagaaaactatgaa
ggcagtgaagaagtttccccgcctcagacgaaagattag
DBGET
integrated database retrieval system
