Daphnia pulex (common water flea): DAPPUDRAFT_323605
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Entry
DAPPUDRAFT_323605 CDS
T04347
Name
(GenBank) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
dpx
Daphnia pulex (common water flea)
Pathway
dpx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dpx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DAPPUDRAFT_323605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpx03400
]
DAPPUDRAFT_323605
Enzymes [BR:
dpx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DAPPUDRAFT_323605
DNA repair and recombination proteins [BR:
dpx03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
DAPPUDRAFT_323605
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
RNA_ligase
BRCT_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
EFX75195
JGI:
Dappu1_323605
UniProt:
E9GZ96
LinkDB
All DBs
Position
Unknown
AA seq
845 aa
AA seq
DB search
MYSVMCLLLPHLDRSRGAYGIKEASLAKLYINIFSLPKDGVDAIRLLKYKVPKTTQRIAK
DFSDVCYDILKDRCGSSISSGTIADINLFLDNLSKTSSKKTENTERILKPILMKLSALEQ
KWLIRVILRNVKLTGMSEKAVLSTYHPDAKELYDVSNDLEKVCATLIDPLNRTSGIEISL
FNPFRPMLADRLSISKILTKMNNKPFYVETKLDGERTQIHKRGKRYGFYTRRGFDYTSSY
GTDSSTGNFTPRLHDCFPESVTSCILDGEMVAWNVNGSFIVSKGANTDVKSMSPTGELVP
CFVAFDILLLNDEVLSNLPYKERLKFLESTVKVKESVLHFPNRKLVSTKAEVENLLNEAI
DQREEGIVLKSPDSIYKPNERKGGWVKVKPEYVGDMMDHLDVIILGGYHGQGRRRNLISM
FLLGLAVPSIEGNQLEFYSFARVGSGFSDEQLMGLLGKLDPYWQKWDKNAPPPMIHFGRE
KPDVWINPSSSAILEIKASEIVLSNSYKAGMTLRFPRVQRIREDRAWDSCMTLSEVIEMR
KYASGKLATRHCSFTEDTPASKRIKLAGLTAVVAAPFQSADTSDVKKSSSCFSKKEICVL
NGSDSLTKQELERKVVSGGGTVVQNPGHVTFCIVAFKDDMRVKSLKNRPKWDIVRPPWLL
RCLNFDRLVPFRPEDLMIATRATEEKMMQNYDKFGNSLREPTSVEDVALILQRVQDLEHP
TPLSMYEIANLEYEIFGQLPKYGIFRTCVVYVDLFETISDPNSQVISRELEIISFDLRIY
GAQVFNRMDSSVTHVVCDPVSYPHRAIDWKTTNHQREVKFKLVRLEWVEHSINKGSLVDE
MQYYP
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgtactctgtgatgtgccttctccttcctcatctcgatcgttcaagaggagcatatggt
attaaagaggcatctttagcaaaattatacataaacatatttagtcttccaaaggatggg
gtggatgcgattagattgctaaaatacaaagttcccaagacaacccaaagaattgccaaa
gatttttctgatgtctgttatgacattctaaaggatcgttgtggttcaagtattagttct
gggactattgctgacatcaatctgtttttggacaatttgtcaaagacatcatcaaaaaag
acagaaaatacagaaagaattctcaagccaattttgatgaagttatctgctctagaacaa
aagtggctaattagagtaattcttaggaatgttaaattgactgggatgagtgaaaaggct
gtcctatctacctatcatccagatgctaaagaattgtatgatgtatctaatgaccttgag
aaagtctgtgcaacattgatcgacccgttaaatagaacttctggaatagaaatttcgctt
tttaatccatttcgtcccatgttagcggatagactttcgatatctaaaattcttacgaaa
atgaacaacaagccgttctacgtcgaaacaaaattagatggagaaaggactcaaattcat
aaacgaggaaaaagatacggtttctatactcgacgtggatttgattacacgtcaagctat
ggaactgattcctcgactggaaactttactccgcgtctacacgactgttttcccgaatct
gtgaccagttgtattctagatggagagatggtggcttggaatgttaacggatcctttatc
gtatctaagggtgcaaatactgatgtcaagtcaatgtctcctacaggagaactagttcca
tgtttcgtcgcctttgatattcttctactgaatgatgaagtcctatctaatctaccatat
aaggagcgattgaaattcttagaatcgacagtaaaggtaaaagaaagcgttcttcatttt
cccaaccgtaagctagtttctaccaaagcggaagtggaaaacctgctcaatgaagcaatc
gatcaacgggaagaaggaatcgttttaaaaagtccagattcaatctacaaaccgaatgaa
cgtaaaggaggatgggtgaaagtcaagccagaatatgtaggcgacatgatggatcattta
gatgtgattattctgggtggttatcacgggcagggaagaagaagaaatctgatttcgatg
tttttgcttggcctggctgttccgtccattgaagggaaccaattggaattttattcgttt
gccagggtaggatcgggattttcggatgaacaactaatgggtttgctcggaaaactggat
ccttattggcaaaagtgggataaaaacgctcctccgccaatgattcactttggaagagaa
aaaccggatgtatggatcaatccgtcgtcatcagcaatacttgagattaaagcatcggaa
attgtcttaagcaattcttataaggctggaatgactttacgatttccgagagtgcagcgt
attcgtgaagaccgagcttgggattcctgtatgactctaagcgaagtaatcgaaatgagg
aaatatgcttcagggaagcttgccactcgacactgtagctttacagaagatacacctgct
agcaaacggattaaattagcaggcttgactgcagtcgttgcagctccattccaatcagca
gatacatctgatgtcaaaaaatcatccagttgtttttctaaaaaagagatttgcgttttg
aatggctctgactctctaacgaaacaggaactagaacgaaaggtagtttcgggaggcggt
actgttgtccagaatccagggcatgtaacgttttgtatcgttgcttttaaagatgatatg
cgggttaaaagtctcaagaatagaccgaaatgggatattgttcgtccaccatggttactt
cgttgcttaaattttgatcgtcttgttcctttccggcctgaagacttaatgatcgccacc
cgagccacggaggaaaaaatgatgcaaaactatgataaatttggcaatagcttgagagaa
cctacttcagttgaagatgttgctttaatccttcagcgtgtccaagatttggaacatcca
acgccattaagcatgtatgaaattgcaaatctggagtatgagatatttggacaactacct
aaatatggtatatttcgaacttgcgtcgtttacgtcgatttatttgagactatatctgat
ccgaacagtcaagtgatttctcgagagctagaaataatttcttttgatcttcgtatctat
ggtgcccaagttttcaatcgcatggactcatctgtcactcacgtagtatgcgatccggtt
tcatatcctcaccgcgcgattgactggaaaacaaccaaccatcagcgggaagtcaagttc
aaattggtccgattagagtgggtcgaacattccataaataaaggaagtttagttgatgaa
atgcaatattatccttga
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integrated database retrieval system
