Daphnia pulicaria: 124327844
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Entry
124327844 CDS
T08670
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
dpz
Daphnia pulicaria
Pathway
dpz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
124327844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpz03400
]
124327844
Enzymes [BR:
dpz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
124327844
DNA repair and recombination proteins [BR:
dpz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
124327844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
RNA_ligase
BRCT_2
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
124327844
NCBI-ProteinID:
XP_046642818
EnsemblRapid:
LOC124327844
LinkDB
All DBs
Position
2:7539825..7543489
Genome browser
AA seq
888 aa
AA seq
DB search
MLFSEFCNACEEISSSKRSDKQESLSKFLSKCREIVLKDSNFTMYSVMCLLLPHLDRSRG
AYGIKEASLAKLYINIFSLPKDGVDAIRLLKYKVPKTTQRIAKDFSDVCYDILKDRCGSS
ISSGTIADINLFLDNLSKTSSKKTENTERILKPILMKLSALEQKWLIRIILRNVKLTGMS
EKAVLSTYHPDAKELYDVSNDLEKVCATLIDPLNRTSGIEISLFNPFRPMLADRLSISKI
LTKMNNKPFYVETKLDGERTQIHKRGKRYGFYTRRGFDYTPSYGTDPSTGNFTPRLHDCF
PESVTSCILDGEMVAWNVNGSFIVSKGANTDVKSMSPTGELVPCFVAFDILLLNDEVLSN
LPYKERLKFLESTVKVKESVLHFPNRKLVSTKAEVENLLNEAIDQREEGIVLKSPDSIYK
PNERKGGWVKVKPEYVGDMMDHLDVIILGGYHGQGRRRNLISMFLLGLAVPSIEGNQLEF
YSFARVGSGFSDEQLMGLLGKLDPYWQKWDKKAPPPMIHFGREKPDVWINPSSSAILEIK
ASEIVLSNSYKAGITLRFPRVQRIREDRAWDSCMTLSEVIEMRKYASGKLATRHCSFTED
TPASKRIKLAGLTAVVAAPFQSADTSDVKKSSSCFSKKEICVLNGSDSLTKQELERKVVS
GGGTVVQNPGHVTFCIVAFKDDMRVKSLKNRPKWDIVRPPWLLRCLNFDRLVPFRPEDLM
IATRATEEKMMQNYDKFGNSLREPTSVEDVALILQRVQDLEHPTPLSMYEIANLEYEIFG
QLPKYGIFRTCVVYVDLFETISDPNSQVISRELEIISFDLRIYGAQVLNRMDSSVTHVVC
DPVSYPHRAIDWKTTNHQREVKFKLVRLEWVEHSINKGRLVDEMQYYP
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgttattttctgaattttgcaatgcgtgtgaagaaattagttcaagcaaaagaagtgac
aaacaggagagtcttagtaagtttctaagcaaatgtagggagattgttttgaaagattca
aacttcactatgtactctgtgatgtgccttctccttcctcatctcgatcgttcaagagga
gcatatggtattaaagaggcatctttagcaaaattatacataaacatatttagtcttcca
aaggatggggtggatgcgattagattgctaaaatacaaagttcccaagacaacccaaaga
attgccaaagatttttctgatgtctgttatgacattctaaaggatcgttgtggttcaagt
attagttctgggactattgctgacatcaatctctttttggacaatttgtcaaagacatca
tcaaaaaaaacagaaaatacagaaagaattctcaaaccaattttgatgaagttatctgct
ctagaacaaaagtggctaataagaataattcttaggaatgttaaattgactgggatgagt
gaaaaggctgtcctatctacctatcatccagatgctaaagaattgtatgatgtatctaat
gaccttgagaaagtctgtgcaacattgatcgacccgttaaatagaacttctggaatagaa
atttcgctttttaatccatttcgtcccatgttagcggatagactttcgatatctaaaatt
cttacgaaaatgaacaacaagccgttctacgtcgaaacaaaattagatggagaaaggact
caaattcataaacgaggaaaaagatacggtttctatactcgacgtggatttgattacacg
ccaagctatggaactgatccctcgactggaaactttactccgcgtctacacgactgtttt
cccgaatctgtgaccagttgtattctagatggagagatggtggcttggaatgttaacgga
tcctttatcgtatctaagggtgcaaatactgatgtcaagtcaatgtctcctacaggagaa
ctagttccatgtttcgtcgcctttgatattcttctactgaatgatgaagtcctatccaat
ctaccatataaggagcgattgaaattcttagaatcgacagtaaaggtaaaagaaagcgtt
cttcattttcccaaccgtaagctagtttctaccaaagcggaagtggaaaacttgctcaat
gaagcaatcgatcaacgggaagaaggaatcgttttaaaaagtccagattcaatctacaaa
ccgaatgaacgtaaaggaggatgggtgaaagtcaaaccagaatatgtaggcgacatgatg
gatcatttagatgtgattattctgggtggttatcacggacagggaagaagaagaaatctg
atttcgatgtttttgcttggcctggctgttccgtccattgaagggaaccaattggaattt
tattcgtttgccagggtaggatcgggattttcggatgaacaactaatgggtttgctcgga
aagctggatccctattggcaaaagtgggataaaaaagctcctccgccaatgattcacttt
ggaagagaaaaaccggatgtatggatcaatccgtcgtcatcagcaatacttgagattaaa
gcatcggaaattgtcttaagcaattcttataaggctggaataactttacgatttccgaga
gtgcagcgtattcgtgaagaccgagcttgggattcctgtatgactctaagcgaagtaatc
gaaatgagaaaatatgcttcagggaagcttgccactcgacactgtagctttacagaagat
acacctgctagcaaacggattaaattagcaggcttgactgcagtcgttgcagctccattc
caatcagcagatacatctgatgtcaaaaaatcatccagttgtttttctaaaaaagagatt
tgcgttttgaatggctctgactctctaacgaaacaggaactagaacgaaaggtagtttcg
ggaggcggtactgttgtccagaatccagggcatgtaacgttttgtatcgttgcttttaaa
gatgatatgcgggttaaaagtctcaagaatagaccgaaatgggatattgttcgtccacca
tggttacttcgttgcttaaattttgatcgtcttgttcctttccggcctgaagacttaatg
atcgccacccgagccacggaggaaaaaatgatgcaaaactatgataaatttggcaatagc
ttgagagaacctacttcagttgaagatgttgctttaatccttcagcgtgtccaagatttg
gaacatccaacgccattaagcatgtatgaaattgcaaatctggagtatgagatatttgga
caactacctaaatatggtatatttcgaacttgcgtcgtttacgtcgatttatttgagact
atatctgatccgaacagtcaagtgatttctcgagagctagaaataatttcttttgatctt
cgtatctatggtgcccaagttttgaatcgcatggactcatctgtcactcacgtagtatgc
gatccggtttcatatcctcaccgcgcgattgactggaaaacaaccaaccatcagcgggaa
gtcaagttcaaattggtccgattagagtgggtcgaacattccataaataaaggaagatta
gttgatgaaatgcaatattatccttga
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