Deinococcus radiophilus: LMT64_00945
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Entry
LMT64_00945 CDS
T07688
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
drd
Deinococcus radiophilus
Pathway
drd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
drd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMT64_00945 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
drd03019
]
LMT64_00945 (rny)
Messenger RNA biogenesis [BR:
drd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LMT64_00945 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
RNase_Y_N
KH_1
HDOD
ATP-synt_B
KhpA-B_KH
KH_2
Motif
Other DBs
NCBI-ProteinID:
UFA50517
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All DBs
Position
165606..167423
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AA seq
605 aa
AA seq
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MTALYVILALLGIAVAFVMGRALGRQQREVAEQQHEQIARERAEEIRREATAQADALREQ
AQADSDALRIREQQDASSRAEQMLQQAEQKIEEQRQHLAEQLREQRAQLEDRRSQLSEQL
LQFQELRDTLAADRAALDQDRAELTQERTELKAEMAEERERLAADRQEYRSERDAMNREL
ERQSRRAEQLDARGERLDALEERLEGQRRDLAGQEDELQLRSAEIATRLEEVAGLTREDA
RERLLGDLDAELEDEKAARIRAAADQSQKEIQRQARSVIAQAIQRSAAETSAQLSVSVVP
IPSDAMKGRLIGREGRNIRAFEALTGVDLIIDDTPEAVMLSSFNPVRREVAQHVLESLLE
DGRIHPTRIEEMVGRAQEDMRAFIHTQGEEAAIEAGVLGLKPGLLQLLGRMYFRSSYGQN
VLKHSVQVAHLTGIMADELGLDAALARRCGLIHDIGKSIDREIEGTHIEIGVSLGTRFGE
PAEVIDAIAHHHDPENGATLYSVLVAAADAISAARPGARREELEAYTRRLEQLEEIAVSF
PGVQQAYAIQAGREVRVIVQPDQVTDAQATLLARDVAGRIEQDMEYPGQVQVTVIRESRA
TEMAR
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgccctttatgtcattttggctctgttgggaatcgccgtggcctttgtcatgggc
cgggcgctgggccgtcagcagcgcgaggtggctgagcagcagcacgagcaaatcgcccgc
gagcgtgccgaagagattcgccgtgaggccaccgcccaagccgacgccctgcgtgagcag
gcccaggccgattccgacgccctgcgtatacgtgagcagcaagacgcctcatcgcgggcc
gagcagatgctccaacaggccgaacagaaaatagaagagcagcgccagcacttggctgag
cagttacgtgagcagcgtgcccaactggaagaccgccgcagccaactgagtgagcagctg
ctgcagtttcaggagctgcgcgacaccctagcggctgaccgcgccgcactggaccaagac
cgcgccgagctgacccaggagcgcaccgaactgaaagccgaaatggctgaggagcgtgag
cgcctggccgccgaccgccaggagtaccgcagcgaacgtgacgccatgaaccgcgagctg
gagcgccaaagccgccgcgctgagcagctggacgcccgtggtgagcgcctggacgccctg
gaagaaaggctggaggggcagcgccgcgatctggctggtcaggaggacgagttgcaactc
cgcagcgccgaaatcgctactcgcctggaagaagtggcgggcctgacccgtgaggacgcc
cgcgagcggctcttgggtgatctggacgctgaactggaggatgaaaaggccgcccgcatc
cgtgccgctgctgatcaaagccagaaggaaattcagcgccaggcccgcagtgtgatcgca
caggccattcagcgcagcgccgctgagaccagtgcccagctgtcggtcagcgtggtcccg
attcccagcgacgccatgaagggtcgcctgattggccgcgagggccgcaatattcgggct
tttgaggcgttgaccggggtggacctgattatcgacgacacccctgaagcagtgatgttg
agcagtttcaatccggtgcgccgtgaggtggcccagcatgtgctggagtcgctgctggaa
gatggccgcattcaccccacccgcattgaggagatggtgggccgcgctcaggaagacatg
cgggcctttatccatactcagggcgaagaagccgccattgaagctggcgtgctggggctc
aagccggggttgctgcaacttttgggccggatgtatttccgctccagctacgggcagaat
gtcctcaagcactcggtgcaggtggcgcacctgacgggcatcatggctgacgaactgggg
ctggacgccgcgctggcccgccgctgcggactgatccacgacatcggcaagagcattgac
cgcgagattgaaggcacccacattgagatcggggtcagcctgggtacccgcttcggtgaa
ccggcagaggtgattgacgcgattgcccaccaccacgatcctgaaaacggcgcgacgctg
tactcggtgctggtggccgctgccgacgcgatcagtgcggcccgccctggggcgcggcgt
gaggagctggaagcctatacccgacgcctggagcaactggaagaaatcgccgtgagcttt
ccgggcgtgcagcaggcctacgccattcaagcgggccgcgaggtgcgcgtgatcgtgcag
ccagatcaggtgaccgatgctcaggccacgctgctggcccgcgacgtggcggggcgcatc
gagcaggacatggagtaccccggtcaggtccaggtgacggtgatccgcgaaagccgggca
accgaaatggcacggtag
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