Danio rerio (zebrafish): 100136871
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Entry
100136871 CDS
T01004
Symbol
ddx43
Name
(RefSeq) probable ATP-dependent RNA helicase DDX43
KO
K17043
ATP-dependent RNA helicase DDX43 [EC:
5.6.2.7
]
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dre03041
]
100136871 (ddx43)
Enzymes [BR:
dre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100136871 (ddx43)
Spliceosome [BR:
dre03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
100136871 (ddx43)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_1
MOEP19
ResIII
KH_2
CMS1
SNF2-rel_dom
KhpA-B_KH
Motif
Other DBs
NCBI-GeneID:
100136871
NCBI-ProteinID:
NP_001315122
ZFIN:
ZDB-GENE-080204-77
Ensembl:
ENSDARG00000022614
UniProt:
B8A609
LinkDB
All DBs
Position
13:complement(27332652..27354003)
Genome browser
AA seq
719 aa
AA seq
DB search
MSDWEDEYDGDGVAVSKQLTLPAKPAPVKSWRPPSPRGARNRETSSAGAKFGGDGEQWVN
WRNRDSDFDVFDGAAGKNNSYSRSRIGPTRSRGYADRGDSSSVTLNVENSLVGRIIGRGG
AKIRELQESSGASIKITRGAHEAEVLICGSCDAQHKAKDMIEDLVHENMGGSGYRNGNSS
QGYQNNSCWSASAVKAAAAAAPAPTPIDWTSLRENRDKYEAMKWQDLPVLKKNFYIEAKS
VAARSAEEVKIWRKENNNIFVDDLKDGDKRTIPNPVCTFEEAFAHYPGIMENIVRVGFKK
PTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHMDGQPMPRDKRNGPGMLVLTP
TRELALQIEAECNKYSYKGFKSICIYGGGDRNAQIKVVTSGVDIVIATPGRLNDLQMNEL
INLRSITYLVLDEADRMLDMGFEPQIMKIILDIRPDRQTVMTSATWPPGVRRLAKSYLKD
PMMVYVGTLDLAAVNTVQQTVLFVQEDEKKDYVFDFIHRMEPLDKVLIFVGKKLKADDLS
SDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVRILVATDLASRGLDVHDITHVFNYDF
PRNVEEYVHRVGRTGRAGRSGESVTLVTREDWRVAAELITILERSGQDVPEELVLMAERY
EKHRREKEMFGPRSGRGGGGGGGGRGGGWGGGGGGRGGGGGGGGGGRRGGYRGGSDLPF
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtcggactgggaagatgaatacgacggagatggcgtggcggtttcaaagcagttaacg
ttacctgctaaacctgcgccggtaaaatcatggaggcctccgtcacctcgaggcgcgcgc
aatcgagaaacctccagcgctggtgcaaaatttggcggagacggagagcagtgggtgaac
tggaggaacagagattcggatttcgatgtctttgacggtgcagccggtaaaaataacagt
tacagtcgatccaggattggaccaacacgaagtcgcggttacgcagaccgtggagattca
tcatcggtaactctgaacgtggaaaactcattggtcgggagaataataggtcgaggtggt
gcgaaaatacgagagcttcaagagagcagtggagcatcaataaagataacccgtggtgca
catgaagctgaagtgctcatctgtggaagctgtgatgctcaacacaaagccaaagacatg
attgaagatctggtgcatgaaaatatgggaggttctggataccgcaatggaaacagcagt
caagggtatcaaaataactcttgttggtcagcttctgctgttaaagcggcagctgcagct
gcaccagcacctacccccattgactggacttcacttagagaaaaccgggacaaatatgaa
gctatgaaatggcaagatcttcctgttctaaagaagaatttctatattgaagcaaaatca
gtggctgcgcgcagtgctgaagaagtcaagatctggagaaaagagaacaacaatatcttt
gtggacgatttaaaagatggtgacaaaagaacaattcccaatccagtgtgcacgtttgag
gaagcttttgctcactatcctggcatcatggaaaacattgtcagagtagggtttaaaaaa
ccaacacccattcagtcgcaggcctggccagtcgtcctgaatggaatagatcttattgga
atagcccagacaggaacaggcaaaactctggcctacctccttcctggattcattcatatg
gatggacaaccaatgcccagggacaaaagaaatggccctggcatgttggttttgactcct
actcgtgagctggccctccagatcgaagcagagtgcaacaaatacagctacaagggattt
aaaagtatctgtatctatggaggaggtgaccgaaatgcccagattaaagtagtgaccagt
ggtgtggacattgtcattgcaacacctggacggttaaatgatctgcagatgaatgagctc
attaatttgcgctccatcacctatttggtgttggatgaggctgatagaatgttggacatg
ggatttgaacctcaaatcatgaaaatcattctggatattcgaccagacaggcaaacggtt
atgactagtgccacctggccaccaggtgttcggcgactggccaaatcctacctgaaagat
ccaatgatggtttatgtgggcacactggatctagcagcagtgaacactgttcagcaaacg
gtgctgtttgtgcaggaggatgaaaaaaaagactacgtttttgatttcattcaccgaatg
gagcctctggacaaagtactaatatttgttggaaaaaaactcaaagctgacgacctctcc
agtgacctgtgtcttcagggtatagcggtacagtctctgcatggagaccgagagcaatgc
gacagagaagaggccctgcaggactttaaagatggtcgtgtgcgtattctggtggccact
gacctggcctccagggggctagatgtgcatgacatcacgcatgtgttcaactatgatttc
ccgaggaatgtggaggagtatgtgcaccgtgttgggagaacaggtcgtgcagggaggtct
ggtgaatctgtaaccctggtgactagagaggattggagagtagcagctgagctaatcacc
atcctggagagatctggtcaggatgtaccagaagaactggtactaatggctgagcgttat
gaaaaacaccggagggagaaagaaatgtttggacccaggagcggaagaggaggaggaggg
ggagggggtggaagaggaggaggatggggaggaggtgggggtggaagaggaggtggcggc
ggcggaggaggaggaggacgaagaggtggttatagaggaggctcagacctgccattctga
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